Circos > Citations > Scientific

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Circos has been used and referenced in many scientific publications (9,378 as of January 2024, Google Scholar citations).

I also keep a list of published images.

Circos in Scientific Literature

1Aboukhalil R, Fendler B, Atwal GS 2013 ArXiv e-prints
2Adhikari BN, Hamilton JP, Zerillo MM et al. 2013 Comparative Genomics Reveals Insight into Virulence Strategies of Plant Pathogenic Oomycetes PLoS One 8:e75072.
3Akdemir KC, Jain AK, Allton K et al. 2013 Genome-wide profiling reveals stimulus-specific functions of p53 during differentiation and DNA damage of human embryonic stem cells Nucleic Acids Res
4Albertsen M, Hansen LB, Saunders AM et al. 2011 A metagenome of a full-scale microbial community carrying out enhanced biological phosphorus removal The ISME journal
5Albertsen M, Hugenholtz P, Skarshewski A et al. 2013 Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes Nature biotechnology
6Alexander RP, Fang G, Rozowsky J et al. 2010 Annotating non-coding regions of the genome Nat Rev Genet 11:559-571.
7Ali A, Soares S, Barbosa E et al. 2013 Microbial Comparative Genomics: An Overview of Tools and Insights Into The Genus Corynebacterium J Bacteriology & Parasitology 4:167.
8Alnemer LM, Seetan RI, Bassi FM et al. 2013 Wheat Zapper: a flexible online tool for colinearity studies in grass genomes Funct Integr Genomics 13:11-17.
9AlNoamany Y, AlSum A, Weigle MC et al. 2013 Who and What Links to the Internet Archive arxiv 1309.4016:
10Alsallkah B, Aigner W, Miksch S et al. 2012 IEEE Transactions on Visualization and Computer Graphics (Proceedings of IEEE VAST 2012) 18:
11Amadou C, Pascal G, Mangenot S et al. 2008 Genome sequence of the beta-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia Genome research 18:1472-1483.
12Angelakis E, Million M, D’Amato F et al. 2012 Q fever and pregnancy: disease, prevention, and strain specificity European Journal of Clinical Microbiology & Infectious Diseases 1-8.
13Aury JM, Jaillon O, Duret L et al. 2006 Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia Nature 444:171-178.
14Baker M 2010 Epigenome: Mapping in Motion Nature Methods 7:181-186.
15Barnard RT, Loftis KL, Martin RS et al. 2013 Development of a robust mapping between AIS 2+ and ICD-9 injury codes Accident Analysis & Prevention 52:133-143.
16Bass AJ, Lawrence MS, Brace LE et al. 2011 Genomic sequencing of colorectal adenocarcinomas identifies a recurrent VTI1A-TCF7L2 fusion Nat Genet 43:964-968.
17Batelli G, Oh D-H, D’Urzo M et al. 2014 Using Arabidopsis-Related Model Species (ARMS): Growth, Genetic Transformation, and Comparative Genomics In Arabidopsis Protocols, (ed. JJ Sanchez-Serrano, J Salinas), p. 27-51. Humana Press.
18Beck J, Hennecke S, Bornemann-Kolatzki K et al. 2013 Genome Aberrations in Canine Mammary Carcinomas and Their Detection in Cell-Free Plasma DNA PLoS One 8:e75485.
19Beecham AH Patsopoulos NA Xifara DK et al. 2013 Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis Nat Genet
20Bekele WA, Fiedler K, Shiringani A et al. 2013 Unravelling the genetic complexity of sorghum seedling development under low temperature conditions Plant, cell & environment
21Bekele WA, Wieckhorst S, Friedt W et al. 2013 High-throughput genomics in sorghum: from whole-genome resequencing to a SNP screening array Plant biotechnology journal
22Bellgard MI, Wanchanthuek P, La T et al. 2009 Genome sequence of the pathogenic intestinal spirochete brachyspira hyodysenteriae reveals adaptations to its lifestyle in the porcine large intestine PLoS One 4:e4641.
23Bellieny-Rabelo D, Oliveira AE, Venancio TM 2013 Impact of whole-genome and tandem duplications in the expansion and functional diversification of the f-box family in legumes (fabaceae) PLoS One 8:e55127.
24Bello JP, Grosche P, Muller M et al. 2011 ACM Computers in Entertainment 1:
25Berger MF, Lawrence MS, Demichelis F et al. 2011 The genomic complexity of primary human prostate cancer Nature 470:214-220.
26Bhatt AS, Freeman SS, Herrera AF et al. 2013 Sequence-based discovery of Bradyrhizobium enterica in cord colitis syndrome The New England journal of medicine 369:517-528.
27Bhavani SK, Drake J, Bellela G et al.. 2013. How Complimentary Bipartite Visual Analytical Representations Reveal Patterns in Cytokine Expression: A Case Study in Rickettsioses. In AMIA Proceedings.
28Bhavnani S, Drake J, Divekar R 2014 The Role of Visual Analytics in Asthma Phenotyping and Biomarker Discovery In Heterogeneity in Asthma, (ed. AR Brasier), p. 289-305. Springer US.
29Bhavnani SK, Bellala G, Victor S et al. 2012 The role of complementary bipartite visual analytical representations in the analysis of SNPs: a case study in ancestral informative markers Journal of the American Medical Informatics Association 19:e5-e12.
30Biggs PJ, Fearnhead P, Hotter G et al. 2011 Whole-Genome Comparison of Two Campylobacter jejuni Isolates of the Same Sequence Type Reveals Multiple Loci of Different Ancestral Lineage PLoS One 6:e27121.
31Bindewald E, Shapiro BA 2013 Computational detection of abundant long-range nucleotide covariation in Drosophila genomes Rna 19:1171-1182.
32Boeva V, Jouannet S, Daveau R et al. 2013 Breakpoint features of genomic rearrangements in neuroblastoma with unbalanced translocations and chromothripsis PLoS One 8:e72182.
33Bollongino R, Nehlich O, Richards MP et al. 2013 2000 years of parallel societies in Stone Age Central Europe Science 342:479-481.
34Borkin MA, Yeh CS, Boyd M et al.. 2013. Evaluation of Filesystem Provenance Visualization Tools. In IEEE Information Visualization 2013, Atlanta, GA.
35Bornelöv S, Enroth S, Komorowski J 2012 Visualization of Rules in Rule-Based Classifiers Intelligent Decision Technologies In J Watada, T Watanabe, G Phillips-Wren, RJ Howlett, LC Jain), p. 329-338. Springer Berlin Heidelberg.
36Borst L, Wesolowska A, Joshi T et al. 2012 Genome-wide analysis of cytogenetic aberrations in ETV6/RUNX1-positive childhood acute lymphoblastic leukaemia British journal of haematology
37Bossen C, Mansson R, Murre C 2012 Chromatin topology and the regulation of antigen receptor assembly Annual review of immunology 30:337-356.
38Bossolini E, Klahre U, Brandenburg A et al. 2011 High resolution linkage maps of the model organism Petunia reveal substantial synteny decay with the related genome of tomato Genome 54:327-340.
39Bousios A, Kourmpetis YA, Pavlidis P et al. 2011 The turbulent life of Sirevirus retrotransposons and the evolution of the maize genome: more than ten thousand elements tell the story Plant J
40Branham MT, Marzese DM, Laurito SR et al. 2012 Methylation profile of triple-negative breast carcinomas Oncogenesis 1:e17.
41Brastianos PK, Horowitz PM, Santagata S et al. 2013 Genomic sequencing of meningiomas identifies oncogenic SMO and AKT1 mutations Nat Genet
42Brown AM, Huynh LY, Bolender CM et al. 2013 Population genomics of a symbiont in the early stages of a pest invasion Mol Ecol
43Bunting SF, Nussenzweig A 2013 End-joining, translocations and cancer Nat Rev Cancer
44Burkart-Waco D, Josefsson C, Dilkes BR et al. 2011 Hybrid incompatibility in Arabidopsis is determined by a multi-locus genetic network Plant physiology
45Busemeyer L, Ruckelshausen A, Moller K et al. 2013 Precision phenotyping of biomass accumulation in triticale reveals temporal genetic patterns of regulation Scientific reports 3:2442.
46Buyyarapu R, Kantety RV, Yu JZ et al. 2013 BAC-Pool Sequencing and Analysis of Large Segments of A12 and D12 Homoeologous Chromosomes in Upland Cotton PLoS One 8:e76757.
47Bzhalava D, Johansson H, Ekstrom J et al. 2013 Unbiased approach for virus detection in skin lesions PLoS One 8:e65953.
48Campbell PJ, Stephens PJ, Pleasance ED et al. 2008 Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing Nat Genet 40:722-729.
49Campbell SJ, Gaulton A, Marshall J et al. 2009 Visualizing the drug target landscape Drug Discov Today 15:3-15.
50Cannon EK, Cannon SB 2011 Chromosome visualization tool: a whole genome viewer International journal of plant genomics 2011:373875.
51Carbone L, Harris RA, Vessere GM et al. 2009 Evolutionary breakpoints in the gibbon suggest association between cytosine methylation and karyotype evolution PLoS Genet 5:e1000538.
52Carless MA, Griffiths LR 2011 Cytogenetics of Primary Skin Tumors In Molecular Diagnostics in Dermatology and Dermatopathology, (ed. MJ Murphy), p. 57-72. Humana Press.
53Carlier AL, Eberl L 2012 The eroded genome of a Psychotria leaf symbiont: hypotheses about lifestyle and interactions with its plant host Environ Microbiol
54Carver T, Thomson N, Bleasby A et al. 2009 DNAPlotter: circular and linear interactive genome visualization Bioinformatics 25:119-120.
55Catchen JM, Conery JS, Postlethwait JH 2009 Automated identification of conserved synteny after whole-genome duplication Genome research 19:1497-1505.
56Cattoir V, Narasimhan G, Skurnik D et al. 2013 Transcriptional response of mucoid Pseudomonas aeruginosa to human respiratory mucus mBio 3:e00410-00412.
57Cer RZ, Donohue DE, Mudunuri US et al. 2012 Non-B DB v2.0: a database of predicted non-B DNA-forming motifs and its associated tools Nucleic Acids Res
58Chagne D, Crowhurst RN, Troggio M et al. 2012 Genome-Wide SNP Detection, Validation, and Development of an 8K SNP Array for Apple PLoS One 7:e31745.
59Chang VY, Federman N, Martinez-Agosto J et al. 2012 Whole exome sequencing of pediatric gastric adenocarcinoma reveals an atypical presentation of Li-Fraumeni syndrome Pediatric blood & cancer
60Che D, Wang H 2013 GIV: A Tool for Genomic Islands Visualization Bioinformation 9:879-882.
61Chen G, Wang C, Shi L et al. 2013 Incorporating the human gene annotations in different databases significantly improved transcriptomic and genetic analyses Rna
62Chen H, Tian Y, Shu W et al. 2012 Comprehensive Identification and Annotation of Cell Type-Specific and Ubiquitous CTCF-Binding Sites in the Human Genome PLoS One 7:e41374.
63Chen R, Giliani S, Lanzi G et al. 2013 Whole-exome sequencing identifies tetratricopeptide repeat domain 7A (TTC7A) mutations for combined immunodeficiency with intestinal atresias The Journal of allergy and clinical immunology 132:656-664 e617.
64Cheng J, Zeng X, Ren G et al. 2013 CGAP: a new comprehensive platform for the comparative analysis of chloroplast genomes BMC Bioinformatics 14:95.
65Chiarle R, Zhang Y, Frock RL et al. 2011 Genome-wide Translocation Sequencing Reveals Mechanisms of Chromosome Breaks and Rearrangements in B Cells Cell 147:107-119.
66Chin CS, Sorenson J, Harris JB et al. 2011 The origin of the Haitian cholera outbreak strain The New England journal of medicine 364:33-42.
67Cho BK, Zengler K, Qiu Y et al. 2009 The transcription unit architecture of the Escherichia coli genome Nature biotechnology 27:1043-1049.
68Claessen JHT. 2011. Visualization of Multivariate Data. In Department of Mathematics and Computer Science, Vol Masters. Eidhoven University of Technology, Eidhoven.
69Clark MJ, Homer N, O'Connor BD et al. 2010 U87MG decoded: the genomic sequence of a cytogenetically aberrant human cancer cell line PLoS Genet 6:e1000832.
70Clark TA, Lu X, Luong K et al. 2013 Enhanced 5-methylcytosine detection in single-molecule, real-time sequencing via Tet1 oxidation BMC biology 11:4.
71Clark TA, Murray IA, Morgan RD et al. 2011 Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing Nucleic Acids Research
72Clayton AL, Oakeson KF, Gutin M et al. 2012 A novel human-infection-derived bacterium provides insights into the evolutionary origins of mutualistic insect-bacterial symbioses PLoS Genet 8:e1002990.
73Cockram J, Thiel T, Steuernagel B et al. 2012 Genome Dynamics Explain the Evolution of Flowering Time CCT Domain Gene Families in the Poaceae PLoS One 7:e45307.
74Coelho AC, Boisvert S, Mukherjee A et al. 2012 Multiple Mutations in Heterogeneous Miltefosine-Resistant Leishmania major Population as Determined by Whole Genome Sequencing PLoS neglected tropical diseases 6:e1512.
75Cooke T, Horberry T, Burgess-Limerick R. 2012. Revisiting injury narratives to pinpoint human factor issues associated with surface mobile mining equipment. In Occupational Safety in Transport Conference 2012, Gold Coast, QLD, Australia.
76Costello JF, Krzywinski M, Marra MA 2009 A first look at entire human methylomes Nature biotechnology 27:1130-1132.
77Cruz J, Liu Y, Liang Y et al. 2011 BacMap: an up-to-date electronic atlas of annotated bacterial genomes Nucleic Acids Res
78Curtin SJ, Kantar MB, Yoon HW et al. 2012 Co-expression of soybean Dicer-like genes in response to stress and development Funct Integr Genomics
79D'Hont A, Denoeud F, Aury J-M et al. 2012 The banana (Musa acuminata) genome and the evolution of monocotyledonous plants Nature 488:213-217.
80Damas J, Carneiro J, Goncalves J et al. 2012 Mitochondrial DNA deletions are associated with non-B DNA conformations Nucleic Acids Res
81Darzentas N 2010 Circoletto: visualizing sequence similarity with Circos Bioinformatics 26:2620-2621.
82Daub JT, Hofer T, Cutivet E et al. 2013 Evidence for Polygenic Adaptation to Pathogens in the Human Genome Mol Biol Evol
83Davidson RM, Gowda M, Moghe G et al. 2012 Comparative transcriptomics of three Poaceae species reveals patterns of gene expression evolution Plant J
84Dayem Ullah AZ, Cutts RJ, Ghetia M et al. 2013 The pancreatic expression database: recent extensions and updates Nucleic Acids Res
85De Fazio S, Bartonicek N, Di Giacomo M et al. 2011 The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements Nature advanced online:-.
86Demaere MZ, Williams TJ, Allen MA et al. 2013 High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake Proc Natl Acad Sci U S A
87Demare LE, Leng J, Cotney J et al. 2013 The genomic landscape of cohesin-associated chromatin interactions Genome research
88Demiralp C, Hayden E, Hammerbacher J et al.. 2013. invis: Exploring High-Dimensional RNA Sequences from In Vitro Selection. In IEEE Symposium on Biological Data Visualization, Atlanta, GA.
89den Bakker HC, Cummings CA, Ferreira V et al. 2010 Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss BMC Genomics 11:688.
90den Bakker HC, Desjardins CA, Griggs AD et al. 2013 Evolutionary Dynamics of the Accessory Genome of Listeria monocytogenes PLoS One 8:e67511.
91Deng N, Goh LK, Wang H et al. 2012 A comprehensive survey of genomic alterations in gastric cancer reveals systematic patterns of molecular exclusivity and co-occurrence among distinct therapeutic targets Gut
92Deng N, Goh LK, Wang H et al. 2012 A comprehensive survey of genomic alterations in gastric cancer reveals systematic patterns of molecular exclusivity and co-occurrence among distinct therapeutic targets Gut 61:673-684.
93Dere E, Lo R, Celius T et al. 2011 Integration of Genome-Wide Computation DRE Search, AhR ChIP-chip and Gene Expression Analyses of TCDD-Elicited Responses in the Mouse Liver BMC Genomics 12:365.
94Dhillon BK, Chiu TA, Laird MR et al. 2013 IslandViewer update: improved genomic island discovery and visualization Nucleic Acids Res
95Diguistini S, Liao NY, Platt D et al. 2009 De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data Genome Biol 10:R94.
96Ding L, Ellis MJ, Li S et al. 2010 Genome remodelling in a basal-like breast cancer metastasis and xenograft Nature 464:999-1005.
97Disanto G, Sandve GK, Berlanga-Taylor AJ et al. 2012 Vitamin D receptor binding, chromatin states and association with multiple sclerosis Human molecular genetics
98Dittwald P, Gambin T, Gonzaga-Jauregui C et al. 2012 Inverted low-copy repeats and genome instability-A genome-wide analysis Human mutation
99Djebali S, Lagarde J, Kapranov P et al. 2012 Evidence for transcript networks composed of chimeric RNAs in human cells PLoS One 7:e28213.
100Dobbins SE, Sherborne AL, Ma YP et al. 2013 The silent mutational landscape of infant MLL-AF4 pro-B acute lymphoblastic leukemia Genes Chromosomes Cancer 52:954-960.
101Dohm JC, Lange C, Holtgrawe D et al. 2012 Palaeohexaploid ancestry for Caryophyllales inferred from extensive gene-based physical and genetic mapping of the sugar beet genome (Beta vulgaris) Plant J 70:528-540.
102Du J, Tian Z, Sui Y et al. 2012 Pericentromeric Effects Shape the Patterns of Divergence, Retention, and Expression of Duplicated Genes in the Paleopolyploid Soybean Plant Cell
103Duan Z, Andronescu M, Schutz K et al. 2010 A three-dimensional model of the yeast genome Nature 465:363-367.
104Durrens P, Nikolski M, Sherman D 2008 Fusion and fission of genes define a metric between fungal genomes PLoS Comput Biol 4:e1000200.
105Edgren H, Murumagi A, Kangaspeska S et al. 2011 Identification of fusion genes in breast cancer by paired-end RNA-sequencing Genome Biol 12:R6.
106Editorial board of I 2013 Perspectives on design creativity and innovation research International Journal of Design Creativity and Innovation 1:1-42.
107Egan JB, Shi CX, Tembe W et al. 2012 Whole-genome sequencing of multiple myeloma from diagnosis to plasma cell leukemia reveals genomic initiating events, evolution, and clonal tides Blood 120:1060-1066.
108Eichten SR, Briskine R, Song J et al. 2013 Epigenetic and genetic influences on DNA methylation variation in maize populations Plant Cell 25:2783-2797.
109Ellis MJ, Ding L, Shen D et al. 2012 Whole-genome analysis informs breast cancer response to aromatase inhibition Nature 486:353-360.
110Ellwood SR, Liu Z, Syme RA et al. 2010 A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres Genome Biol 11:R109.
111Enroth S, Bornelov S, Wadelius C et al. 2012 Combinations of histone modifications mark exon inclusion levels PLoS One 7:e29911.
112Enyeart PJ, Chirieleison SM, Dao MN et al. 2013 Generalized bacterial genome editing using mobile group II introns and Cre-lox Mol Syst Biol 9:
113Eswaran J, Cyanam D, Mudvari P et al. 2012 Transcriptomic landscape of breast cancers through mRNA sequencing Scientific reports 2:264.
114Etherington GJ, MacLean D 2013 SVGenes: a library for rendering genomic features in scalable vector graphic format Bioinformatics 29:1890-1892.
115Evrony GD, Cai X, Lee E et al. 2012 Single-neuron sequencing analysis of l1 retrotransposition and somatic mutation in the human brain Cell 151:483-496.
116Falentin H, Deutsch S-M, Jan G et al. 2010 The Complete Genome of Propionibacterium freudenreichii CIRM-BIA1T, a Hardy Actinobacterium with Food and Probiotic Applications PLoS One 5:e11748.
117Fang Y, Wu H, Zhang T et al. 2012 A Complete Sequence and Transcriptomic Analyses of Date Palm (Phoenix dactylifera L.) Mitochondrial Genome PLoS One 7:e37164.
118Farhat MR, Shapiro BJ, Kieser KJ et al. 2013 Genomic analysis identifies targets of convergent positive selection in drug-resistant Mycobacterium tuberculosis Nat Genet 45:1183-1189.
119Feichtinger J, Thallinger GG, McFarlane RJ et al. 2012 Microarray Meta-Analysis: From Data to Expression to Biological Relationships Computational Medicine In Z Trajanoski), p. 59-77. Springer Vienna.
120Ferreira de Carvalho J, Chelaifa H, Boutte J et al. 2013 Exploring the genome of the salt-marsh Spartina maritima (Poaceae, Chloridoideae) through BAC end sequence analysis Plant Mol Biol
121Ferreira de Carvalho J, Poulain J, Da Silva C et al. 2012 Transcriptome de novo assembly from next-generation sequencing and comparative analyses in the hexaploid salt marsh species Spartina maritima and Spartina alterniflora (Poaceae) Heredity
122Feulner PG, Chain FJ, Panchal M et al. 2012 Genome-wide patterns of standing genetic variation in a marine population of three-spined sticklebacks Mol Ecol
123Flannery MC 2009 Writing Across Rome The American Biology Teacher 71:52-55.
124Flint A, Butcher J, Clarke C et al. 2010 Use of a rabbit soft tissue chamber model to investigate campylobacter jejuni-host interactions Front Microbiol 1:126.
125Flot JF, Hespeels B, Li X et al. 2013 Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga Nature 500:453-457.
126Forbes SA, Tang G, Bindal N et al. 2009 COSMIC (the Catalogue of Somatic Mutations in Cancer): a resource to investigate acquired mutations in human cancer Nucleic Acids Res 38:D652-657.
127Franklin S, Chen H, Mitchell-Jordan S et al. 2012 Quantitative analysis of the chromatin proteome in disease reveals remodeling principles and identifies high mobility group protein B2 as a regulator of hypertrophic growth Molecular & cellular proteomics : MCP
128Frech C, Chen N 2011 Genome comparison of human and non-human malaria parasites reveals species subset-specific genes potentially linked to human disease PLoS Comput Biol 7:e1002320.
129Freeman JD, Warren RL, Webb JR et al. 2009 Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing Genome research 19:1817-1824.
130Furney SJ, Turajlic S, Fenwick K et al. 2012 Genomic Characterisation of Acral Melanoma Cell Lines Pigment cell & melanoma research
131Gamwell LF, Gambaro K, Merziotis M et al. 2013 Small cell ovarian carcinoma: genomic stability and responsiveness to therapeutics Orphanet journal of rare diseases 8:33.
132Gao D, Middleton R, Rasko JE et al. 2013 miREval 2.0: a web tool for simple microRNA prediction in genome sequences Bioinformatics
133Gao F, Wei Z, An W et al. 2013 The interactomes of POU5F1 and SOX2 enhancers in human embryonic stem cells Scientific reports 3:1588.
134Gao ZY, Zhao SC, He WM et al. 2013 Dissecting yield-associated loci in super hybrid rice by resequencing recombinant inbred lines and improving parental genome sequences Proc Natl Acad Sci U S A 110:14492-14497.
135Gedye K, Gonzalez-Hernandez J, Ban Y et al. 2010 Investigation of the Transcriptome of Prairie Cord Grass, a New Cellulosic Biomass Crop Plant Gen 3:69-80.
136Gherman A, Chen PE, Teslovich TM et al. 2007 Population bottlenecks as a potential major shaping force of human genome architecture PLoS Genet 3:e119.
137Ghosh S, Matsuoka Y, Asai Y et al. 2013 Toward an integrated software platform for systems pharmacology Biopharmaceutics & drug disposition
138Giannuzzi G, Cardone MF, Ventura M et al. 2013 Read-depth Methodology for the Analysis of Recent Segmental Duplications in the Grapevine Genome In Sequence and Genome Analysis I - Humans, Animals and Plants, (ed. i Press), p. iConcept Press.
139Giannuzzi G, D'Addabbo P, Gasparro M et al. 2011 Analysis of high-identity segmental duplications in the grapevine genome BMC Genomics 12:436.
140Giorno F, Guerriero G, Baric S et al. 2012 Heat shock transcriptional factors in Malus domestica: identification, classification and expression analysis BMC Genomics 13:639.
141Goecks J, Eberhard C, Too T et al. 2013 Web-based visual analysis for high-throughput genomics BMC Genomics 14:397.
142Goodwin SB, Ben M'barek S, Dhillon B et al. 2011 Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis PLoS Genet 7:e1002070.
143Grad YH, Godfrey P, Cerquiera GC et al. 2013 Comparative Genomics of Recent Shiga Toxin-Producing Escherichia coli O104:H4: Short-Term Evolution of an Emerging Pathogen mBio 4:
144Gray TA, Krywy JA, Harold J et al. 2013 Distributive conjugal transfer in mycobacteria generates progeny with meiotic-like genome-wide mosaicism, allowing mapping of a mating identity locus PLoS Biol 11:e1001602.
145Grzymski JJ, Riesenfeld CS, Williams TJ et al. 2012 A metagenomic assessment of winter and summer bacterioplankton from Antarctica Peninsula coastal surface waters The ISME journal
146Guo Z, Tao X, Yin C et al. 2013 National borders effectively halt the spread of rabies: the current rabies epidemic in china is dislocated from cases in neighboring countries PLoS neglected tropical diseases 7:e2039.
147Gutierrez-Gonzalez JJ, Garvin DF 2011 The Plant Genome 4:178-190.
148Gutierrez-Gonzalez JJ, Tu ZJ, Garvin DF 2013 Analysis and annotation of the hexaploid oat seed transcriptome BMC Genomics 14:471.
149Guyot R, Lefebvre-Pautigny F, Dubreuil-Tranchant C et al. 2012 Ancestral Synteny Shared between Distantly-Related Plant Species from the Asterid (Coffea canephora and Solanum sp.) and Rosid (Vitis vinifera) Clades BMC Genomics 13:103.
150Hacquard S, Kracher B, Maekawa T et al. 2013 Mosaic genome structure of the barley powdery mildew pathogen and conservation of transcriptional programs in divergent hosts Proc Natl Acad Sci U S A
151Hallin PF, Staerfeldt H-H, Rotenberg E et al. 2009 GeneWiz browser: An Interactive Tool for Visualizing Sequenced Chromosomes Stand Genomic Sci 1:204-215.
152Hampton OA, Den Hollander P, Miller CA et al. 2009 A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome Genome research 19:167-177.
153Hayden KE 2012 Human centromere genomics: now it's personal Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology 20:621-633.
154Hayden KE, Strome ED, Merrett SL et al. 2013 Sequences associated with centromere competency in the human genome Molecular and cellular biology 33:763-772.
155Hayward MR, Jansen VA, Woodward MJ 2013 Comparative genomics of Salmonella enterica serovars Derby and Mbandaka, two prevalent serovars associated with different livestock species in the UK BMC Genomics 14:365.
156Hegedusova E, Brejova B, Tomaska L et al. 2013 Mitochondrial genome of the basidiomycetous yeast Jaminaea angkorensis Curr Genet
157Hennemann S 2013 Information-rich visualisation of dense geographical networks Journal of Maps 1-8.
158Herbig A, Jager G, Battke F et al. 2012 GenomeRing: alignment visualization based on SuperGenome coordinates Bioinformatics 28:i7-i15.
159Hernandez D, Tewhey R, Veyrieras JB et al. 2013 De novo finished 2.8 Mbp Staphylococcus aureus genome assembly from 100 bp short and long range paired-end reads Bioinformatics
160Heyn H, Moran S, Hernando-Herraez I et al. 2013 DNA methylation contributes to natural human variation Genome research 23:1363-1372.
161Heyn H, Vidal E, Sayols S et al. 2012 Whole-genome bisulfite DNA sequencing of a DNMT3B mutant patient Epigenetics : official journal of the DNA Methylation Society 7:
162Higgs BW, Zhu W, Richman L et al. 2011 Identification of activated cytokine pathways in the blood of systemic lupus erythematosus, myositis, rheumatoid arthritis, and scleroderma patients International Journal of Rheumatic Diseases no-no.
163Hillmer AM, Yao F, Inaki K et al. 2011 Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer genomes Genome research 21:665-675.
164Hiltemann S, McClellan EA, van Nijnatten J et al. 2013 iFUSE: integrated FUSion gene Explorer Bioinformatics
165Hirsch D, Kemmerling R, Davis S et al. 2013 Chromothripsis and focal copy number alterations determine poor outcome in malignant melanoma Cancer research 73:1454-1460.
166Ho AS, Kannan K, Roy DM et al. 2013 The mutational landscape of adenoid cystic carcinoma Nat Genet
167Holmfeldt L, Wei L, Diaz-Flores E et al. 2013 The genomic landscape of hypodiploid acute lymphoblastic leukemia Nat Genet
168Hou Y, Song L, Zhu P et al. 2012 Single-Cell Exome Sequencing and Monoclonal Evolution of a JAK2-Negative Myeloproliferative Neoplasm Cell 148:873-885.
169Howe K Clark MD Torroja CF et al. 2013 The zebrafish reference genome sequence and its relationship to the human genome Nature
170Hsueh A, Rauch R 2012 Ovarian Kaleidoscope Database: 10 Years and Beyond Biology of reproduction
171Hu FZ, Eutsey R, Ahmed A et al. 2012 In vivo capsular switch in Streptococcus pneumoniae - analysis by whole genome sequencing PLoS One 7:e47983.
172Hu Y, Wang K, He X et al. 2010 A probabilistic framework for aligning paired-end RNA-seq data Bioinformatics 26:1950-1957.
173Hur M, Campbell AA, Almeida-de-Macedo M et al. 2013 A global approach to analysis and interpretation of metabolic data for plant natural product discovery Natural product reports
174Hur M, Yeo I, Kim E et al. 2010 Correlation of FT-ICR Mass Spectra with the Chemical and Physical Properties of Associated Crude Oils Energy & Fuels 24:5524-5532.
175Illa E, Sargent DJ, Lopez Girona E et al. 2011 Comparative analysis of rosaceous genomes and the reconstruction of a putative ancestral genome for the family BMC Evol Biol 11:9.
176Illingworth CJ, Parts L, Bergstrom A et al. 2013 Inferring genome-wide recombination landscapes from advanced intercross lines: application to yeast crosses PLoS One 8:e62266.
177Imielinski M, Berger AH, Hammerman PS et al. 2012 Mapping the hallmarks of lung adenocarcinoma with massively parallel sequencing Cell 150:1107-1120.
178Irimia A, Chambers MC, Torgerson CM et al. 2012 Patient-tailored connectomics visualization for the assessment of white matter atrophy in traumatic brain injury Frontiers in Neurology 3:
179Irimia A, Chambers MC, Torgerson CM et al. 2012 Circular representation of human cortical networks for subject and population-level connectomic visualization NeuroImage
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