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20 imperatives of information design — BioVis 2012

Circos on Cancer Discovery Covers

The July 2013 issue cover shows a Circos plot of relative copy number changes in 38 oral squamous cell carcinoma tumors.

The September 2012 issue cover shows a collection of Circos images of somatic mutations in melanoma tumors.

July 2013 Pickering CR, Zhang J, Yoo SY et al. 2013 Integrative genomic characterization of oral squamous cell carcinoma identifies frequent somatic drivers Cancer discovery 3:770-781.

Sep 2012 Dahlman KB, Xia J, Hutchinson K et al. 2012 BRAF(L597) mutations in melanoma are associated with sensitivity to MEK inhibitors Cancer discovery 2:791-797.

Circos charts the placenta transcriptome

Saben et al. use Circos to visualize the transcriptome and gene expression of placenta from 20 healthy women in their article A comprehensive analysis of the human placenta transcriptome.

Saben J, Zhong Y, McKelvey S et al. 2014 A comprehensive analysis of the human placenta transcriptome Placenta 35:125-131.

Circos on cover of UCSF Magazine

The Fall 2013 issue of UCSF Magazine has my Circos illustration of personalized medicine. The human outline motif is incorporated into other design elements in the issue.

The look of the image is inspired after Nature's Encode cover by Carl De Torres.

To learn how to generate the cover and variants, read the Circos Encode Cover Tutorial.

Circos on Cover of Cancer Cell

Yang et al. used network analysis approaches characterize a subtype of ovarian cancer associated with poor overall survival.

E-cadherin is a protein encoded by the CDH1 gene and is responsible for cell-cell adhesion. Yang linked the expression of E-cadherin to specific miRNAs that influenced the regulatory network singled out in this cancer subtype.

Yang D, Sun Y, Hu L et al. 2013 Integrated analyses identify a master microRNA regulatory network for the mesenchymal subtype in serous ovarian cancer Cancer cell 23:186-199

Circos reaches 500 literature citations

In October 2013 Circos reached a milestone - 500 citations in peer-reviewed literature.

To celebrate, I've made a commemorative poster that features over 400 Circos images from the literature.

citation list | image gallery | press highlights

Circos deals with 8 Gb Rye Genome

Because of its large 8 Gb genome, the genomic analysis of rye has lagged behind other cereals.

To address this, Martis et al. eastablished a linear gene order model for 72% of the rye genes based on synteny information from rice, sorghum and B. distachyon.

Although it appears that six major translocations shaped the modern rye genome, highly dissimilar conserved syntenic gene content, gene sequence diversity signatures, and phylogenetic networks were found for individual rye syntenic blocks.

Martis MM, Zhou R, Haseneyer G et al. 2013 Reticulate Evolution of the Rye Genome Plant Cell

Circos Stages Mesolithic to Neolithic Transition

Bollongino et al. present evidence of a slow transition between Mesolithic hunter-gatherer groups to Neolithic farmers.

Previous theories that the foragers disappeared shortly after the arrival of farmers are at odds with palaeogenetic and isotopic data analysis from Neolithic human skeletons from the Blätterhöhle burial site in Germany. Instead of an abrupt transition, the data suggest a more complex pattern of coexistence that persisted for over 2000 years.

Bollongino R, Nehlich O, Richards MP et al. 2013 2000 years of parallel societies in Stone Age Central Europe Science 342:479-481.

Circos in 54 million pixels

Ruddle et al. demonstrate their commodity hardware 54 million pixel data display in exploring copy number variation data.

Ruddle RA, Fateen W, Treanor Det al.. 2013. Leveraging Wall-sized High-Resolution Displays for Comparative Genomics Analyses of Copy Number Variation. In IEEE Symposium on Biological Data Visualization, Atlanta, GA.

Circos Tracks CO2 Emissions

Kanemoto et al. report on the disturbing trend of emissions leakage, in which developing countries are displacing emissions intensive production offshore.

The report confirms previous findings that adjusting for trade, developed countries emissions have increased, not decreased. A connection is made to the kind of emissions displacement that has already occurred for air pollution, where despite aggressive legislation in major emitters total global air pollution emissions have increased.

The conclusion warns us that "if regulatory policies do not account for embodied imports, global emissions are likely to rise even if developed countries emitters enforce strong national emissions targets."

Kanemoto K, Moran D, Lenzen M et al. 2013 International trade undermines national emission reduction targets: New evidence from air pollution Global Environmental Change

Circos Round — Lotus Sacred

The pleasing roundness of Circos is used by Ming et al. to depict the Sacred Lotus genome in the publication "Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.).

The Sacred lotus has religious significance in both Buddhism and Hinduism and has been used as a food and herbal medicine product in Asia for over 7,000 years. Its seeds have exceptional longevity, remaining viable for as long as 1,300 years.

The plant is known for its exceptional water repellency, known as the lotus effect. The latter property is due to the nanoscopic closely packed protuberances of its self-cleaning leaf surface, which have been adapted for the manufacture of a self-cleaning industrial paint, Lotusan.

Ming R, Vanburen R, Liu Y et al. 2013 Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.) Genome Biol 14:R41.

6.9e11 g of oil and Circos was there

Rivers et a. describe the effects of the Deepwater Horizon blowout on the microbial blooms of petroleum-degrading bacteria.

By sequencing 66 million community transcripts, the identity of metabolically active microbes and their roles in petroleum consumption was revealed.

Rivers AR, Sharma S, Tringe SG et al. 2013 Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill The ISME journal

Plants Love Circos

Circos frequently appears in plant literature, twice on the cover of Plant Biotechnology Journal in the last year.

Rai KM, Singh SK, Bhardwaj A et al. 2013 Large-scale resource development in Gossypium hirsutum L. by 454 sequencing of genic-enriched libraries from six diverse genotypes Plant biotechnology journal

Bekele WA, Wieckhorst S, Friedt W et al. 2013 High-throughput genomics in sorghum: from whole-genome resequencing to a SNP screening array Plant biotechnology journal

Circos has appeared 8 times each in the Plant Journal and Plant Cell.

Circos Interchange Diagrams — Networks and Flow

Zeng et al. introduce a new type of visualization based on Circos, the interchange diagram, in their paper Visualizing Interchange Patterns in Massive Movement Data.

The design is applied to displaying movement data, such as daily trips made by passengers in a city. By incorporating interactivity, this visualization method is helpful to understand interchange patterns at different spatial (between trains, between cities) and time scales (different times of day).

Circos has been used for urban planning before. The town of Caceres in Spain has used Circos to communicate their urban planning strategy.

project website

Zeng W, Fu C-W, Arisona SM et al. 2013 Visualizing Interchange Patterns in Massive Movement Data Computer Graphics Forum 32:271-280

Circos connects to the connectome

Methods to visualize the connectome are reviewed in Craddock et al — Circos is one of them.

Craddock RC, Jbabdi S, Yan C-G et al. 2013 Imaging human connectomes at the macroscale Nat Meth 10:524-539.

The use of Circos for showing the connectome was introduced by Irimia et al. in Circular representation of human cortical networks for subject and population-level connectomic visualization.

A good layman description of the work can be found at the neurosceptic blog.

Irimia A, Chambers MC, Torgerson CM et al. 2012 Circular representation of human cortical networks for subject and population-level connectomic visualization NeuroImage, Irimia A, Chambers MC, Torgerson CM et al. 2012 Patient-tailored connectomics visualization for the assessment of white matter atrophy in traumatic brain injury Frontiers in Neurology 3

Circos is the Method for Visualizing Translocations

Genomic rearrangements can cause disease and are implicated in many cancers. Being able to see the patterns in these changes across samples and patients is important.

In the review article End-joining, Translocations and Cancer, Bunting and Nussenzweig demonstrate how compositing the genome circularly adds value and clarity to the presentation.

Bunting SF, Nussenzweig A 2013 End-joining, translocations and cancer Nat Rev Cancer

Circos Paints Chromosomes of Capsella Rubella

Slotte et al. use Circos to show the genomic structures, chromosome painting and comparative genomic mapping in C. rubella, A. lyrata and A. thaliana.

Their figure illustrates how Circos is effective at showing two-way comparisons of syntenic structure. For three-way comparison, consider hive plots.

Slotte T, Hazzouri KM, Agren JA et al. 2013 The Capsella rubella genome and the genomic consequences of rapid mating system evolution Nat Genet

Circos on the Cover Of Journal of Pathology

The June 2013 issue of the Journal of Pathology features a pair of Circos plots on the cover. The images are from the paper by Weier et al. describing TMPRSS2 and ERG rearrangements in prostate cancer.

"TMPRSS2–ERG rearrangements occur in approximately 50% of prostate cancers and therefore represent one of the most frequently observed structural rearrangements in all cancers."

Weier C, Haffner MC, Mosbruger T et al. 2013 Nucleotide resolution analysis of TMPRSS2 and ERG rearrangements in prostate cancer J Pathol 230:174-183.

Circos on the Cover Of Nature's Asian Journal of Andrology

The May 2013 Special Issue of Asian Journal of Andrology presents the outcomes from the Sixth Annual Forum on Prostate Disease (6th FPD), which was held on June 8-9, 2012 in Shanghai, China [source: nature.com]. The cover art for the issue shows a Circos plot of 90 significantly recurrent molecular alterations in prostate cancer from an analysis of 372 prostate tumors discussed in the Wyatt et al. review article.

The review summarizes the current state of understanding of prostate cancer, "including the sentinel role of copy number variation, the growing spectrum of oncogenic fusion genes, the potential influence of chromothripsis, and breakthroughs in defining mutation-associated subtypes. Increasing evidence suggests that genomic lesions frequently converge on specific cellular functions and signalling pathways, yet recurrent gene aberration appears rare".

Wyatt AW, Mo F, Wang Y et al. 2013 The diverse heterogeneity of molecular alterations in prostate cancer identified through next-generation sequencing Asian J Androl 15:301-308.

Brain Volume in Epilepsy

Pardoe et al. find that "Sodium valproate use in epilepsy is associated with parietal lobe thinning, reduced total brain volume, and reduced white matter volume."

The cover image shows antiepileptic drug combinations in intractable focal epilepsy cases. Linked drugs were being taken concurrently by an individual. Valproate cases are highlighted in orange.

Pardoe, HR, Berg, AT, and Jackson, GD 2013Sodium valproate use is associated with reduced parietal lobe thickness and brain volume Neurology 80(20):1895-1900.

Improving miR-mRNA Predictions

Rijlaarsdam et al. describe an algorithm for improving miR-mRNA predictions.

"Algorithms predicting miR-mRNA interactions generate high numbers of possible interactions, many of which might be non-existent or irrelevant in a certain biological context. It is desirable to develop a transparent, user-friendly, unbiased tool to enrich miR-mRNA predictions."

Rijlaarsdam MA, Rijlaarsdam DJ, Gillis AJ et al. 2013 miMsg: a target enrichment algorithm for predicted miR-mRNA interactions based on relative ranking of matched expression data Bioinformatics

Round is peachy

The International Peach Genome Initative has ensured that peach, a diploid Prunus species, is one of the best genetically characterized deciduous trees.

"Rosaceae is the most important fruit-producing clade, and its key commercially relevant genera (Fragaria, Rosa, Rubus and Prunus) show broadly diverse growth habits, fruit types and compact diploid genomes."

No mention of fuzz is made.

Verde I, Abbott AG, Scalabrin S et al. 2013 The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution Nat Genet

Circos swims with fish

Howe et al. report on the zebrafish reference genome.

"Zebrafish have become a popular organism for the study of vertebrate gene function. The virtually transparent embryos of this species, and the ability to accelerate genetic studies by gene knockdown or overexpression, have led to the widespread use of zebrafish in the detailed investigation of vertebrate gene function and increasingly, the study of human genetic disease."

Howe K, Clark MD, Torroja CF et al. 2013 The zebrafish reference genome sequence and its relationship to the human genome Nature

For a full list of papers that used Circos, see Circos citations.

Circos images in scientific literature

Circular genome visualization and data visualization with Circos: A comprehensive analysis of the human placenta transcriptome (310 x 427)
1 · 1 Dec 2013 |
1Saben J, Zhong Y, McKelvey S et al. 2014 A comprehensive analysis of the human placenta transcriptome Placenta 35:125-131.
Circular genome visualization and data visualization with Circos: 2000 years of parallel societies in Stone Age Central Europe (310 x 427)
2 · 25 Oct 2013 |
1Bollongino R, Nehlich O, Richards MP et al. 2013 2000 years of parallel societies in Stone Age Central Europe Science 342:479-481.
Circular genome visualization and data visualization with Circos: The pancreatic expression database: recent extensions and updates (310 x 427)
3 · 25 Oct 2013 |
1Dayem Ullah AZ, Cutts RJ, Ghetia M et al. 2013 The pancreatic expression database: recent extensions and updates Nucleic Acids Res
Circular genome visualization and data visualization with Circos: International trade undermines national emission reduction targets: New evidence from air pollution (310 x 427)
4 · 23 Oct 2013 |
1Kanemoto K, Moran D, Lenzen M et al. 2013 International trade undermines national emission reduction targets: New evidence from air pollution Global Environmental Change
Circular genome visualization and data visualization with Circos: Cultivation and Complete Genome Sequencing of <italic>Gloeobacter kilaueensis</italic> sp. nov., from a Lava Cave in Kīlauea Caldera, Hawai
5 · 23 October 2013 |
Circular genome visualization and data visualization with Circos: Fish gut microbiota analysis differentiates physiology and behavior of invasive Asian carp and indigenous American fish (310 x 427)
6 · 17 Oct 2013 |
Circular genome visualization and data visualization with Circos: Genome-wide methylated CpG island profiles of melanoma cells reveal a melanoma coregulation network (310 x 427)
7 · 16 Oct 2013 |
Circular genome visualization and data visualization with Circos: GIV: A Tool for Genomic Islands Visualization (310 x 427)
8 · 16 Oct 2013 |
1Che D, Wang H 2013 GIV: A Tool for Genomic Islands Visualization Bioinformation 9:879-882.
Circular genome visualization and data visualization with Circos: De novo finished 2.8 Mbp Staphylococcus aureus genome assembly from 100 bp short and long range paired-end reads (310 x 427)
9 · 15 Oct 2013 |
Circular genome visualization and data visualization with Circos:  (310 x 427)
11 · 13 October 2013 |
1Ruddle RA, Fateen W, Treanor D et al.. 2013. Leveraging Wall-sized High-Resolution Displays for Comparative Genomics Analyses of Copy Number Variation. In IEEE Symposium on Biological Data Visualization, Atlanta, GA.
Circular genome visualization and data visualization with Circos: Identification of chromosomal translocation hotspots via scan statistics (310 x 427)
12 · 11 Oct 2013 |
1Silva IT, Rosales RA, Holanda AJ et al. 2013 Identification of chromosomal translocation hotspots via scan statistics arXivorg arXiv:1310.3291
Circular genome visualization and data visualization with Circos: Reticulate Evolution of the Rye Genome (310 x 427)
13 · 8 Oct 2013 |
1Martis MM, Zhou R, Haseneyer G et al. 2013 Reticulate Evolution of the Rye Genome Plant Cell
Circular genome visualization and data visualization with Circos: BAC-Pool Sequencing and Analysis of Large Segments of A12 and D12 Homoeologous Chromosomes in Upland Cotton (310 x 427)
14 · 8 Oct 2013 |
Circular genome visualization and data visualization with Circos: Comparative Genomics Reveals Insight into Virulence Strategies of Plant Pathogenic Oomycetes (310 x 427)
15 · 4 Oct 2013 |
1Adhikari BN, Hamilton JP, Zerillo MM et al. 2013 Comparative Genomics Reveals Insight into Virulence Strategies of Plant Pathogenic Oomycetes PLoS One 8:e75072.
Circular genome visualization and data visualization with Circos: Insights into the Evolution of Cotton Diploids and Polyploids from Whole-Genome Re-sequencing (310 x 427)
16 · 1 Oct 2013 |
1Page JT, Huynh MD, Liechty ZS et al. 2013 Insights into the Evolution of Cotton Diploids and Polyploids from Whole-Genome Re-sequencing G3: Genes|Genomes|Genetics 3:1809-1818.
Circular genome visualization and data visualization with Circos: Genome Aberrations in Canine Mammary Carcinomas and Their Detection in Cell-Free Plasma DNA (310 x 427)
18 · 30 Sep 2013 |
1Beck J, Hennecke S, Bornemann-Kolatzki K et al. 2013 Genome Aberrations in Canine Mammary Carcinomas and Their Detection in Cell-Free Plasma DNA PLoS One 8:e75485.
Circular genome visualization and data visualization with Circos: Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis (310 x 427)
19 · 29 Sep 2013 |
Circular genome visualization and data visualization with Circos: Mitochondrial genome of the basidiomycetous yeast Jaminaea angkorensis (310 x 427)
20 · 27 Sep 2013 |
1Hegedusova E, Brejova B, Tomaska L et al. 2013 Mitochondrial genome of the basidiomycetous yeast Jaminaea angkorensis Curr Genet
Circular genome visualization and data visualization with Circos: Next-Generation Sequence Analysis of Cancer Xenograft Models (310 x 427)
21 · 26 Sep 2013 |
1Rossello FJ, Tothill RW, Britt K et al. 2013 Next-Generation Sequence Analysis of Cancer Xenograft Models PLoS One 8:e74432.
Circular genome visualization and data visualization with Circos: FPSAC: fast phylogenetic scaffolding of ancient contigs (310 x 427)
22 · 24 Sep 2013 |
1Rajaraman A, Tannier E, Chauve C 2013 FPSAC: fast phylogenetic scaffolding of ancient contigs Bioinformatics
Circular genome visualization and data visualization with Circos: The landscape of somatic mutations in Down syndrome-related myeloid disorders (310 x 427)
23 · 22 Sep 2013 |
Circular genome visualization and data visualization with Circos: Unravelling the genetic complexity of sorghum seedling development under low temperature conditions (310 x 427)
24 · 22 Sep 2013 |
1Bekele WA, Fiedler K, Shiringani A et al. 2013 Unravelling the genetic complexity of sorghum seedling development under low temperature conditions Plant, cell & environment
Circular genome visualization and data visualization with Circos: Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold (310 x 427)
25 · 20 Sep 2013 |
1Nijkamp JF, Pop M, Reinders MJ et al. 2013 Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold Bioinformatics
Circular genome visualization and data visualization with Circos: Biomining active cellulases from a mining bioremediation system (310 x 427)
26 · 20 Sep 2013 |
1Mewis K, Armstrong Z, Song YC et al. 2013 Biomining active cellulases from a mining bioremediation system Journal of biotechnology 167:462-471.
Circular genome visualization and data visualization with Circos: Acceleration of X-chromosome gene order evolution in the cattle lineage (310 x 427)
27 · 19 Sep 2013 |
1Park W, Oh HS, Kim H 2013 Acceleration of X-chromosome gene order evolution in the cattle lineage BMB reports 46:310-315.
Circular genome visualization and data visualization with Circos: Identification and expression profile analysis of the protein kinase gene superfamily in maize development (310 x 427)
28 · 18 Sep 2013 |
Circular genome visualization and data visualization with Circos: Mammary gland morphology and gene expression signature of weanling male and female rats following exposure to exogenous estradiol (310 x 427)
29 · 18 Sep 2013 |
1Miousse IR, Gomez-Acevedo H, Sharma N et al. 2013 Mammary gland morphology and gene expression signature of weanling male and female rats following exposure to exogenous estradiol Experimental biology and medicine 238:1033-1046.
Circular genome visualization and data visualization with Circos: Genome-wide mapping of gene-microbiota interactions in susceptibility to autoimmune skin blistering (310 x 427)
31 · 17 Sep 2013 |
1Srinivas G, Moller S, Wang J et al. 2013 Genome-wide mapping of gene-microbiota interactions in susceptibility to autoimmune skin blistering Nature communications 4:2462.
Circular genome visualization and data visualization with Circos: Who and What Links to the Internet Archive (310 x 427)
32 · 16 Sep 2013 |
1AlNoamany Y, AlSum A, Weigle MC et al. 2013 Who and What Links to the Internet Archive arxiv 1309.4016
Circular genome visualization and data visualization with Circos: miREval 2.0: a web tool for simple microRNA prediction in genome sequences (310 x 427)
33 · 13 Sep 2013 |
1Gao D, Middleton R, Rasko JE et al. 2013 miREval 2.0: a web tool for simple microRNA prediction in genome sequences Bioinformatics
Circular genome visualization and data visualization with Circos: The More the Merrier: Recent Hybridization and Polyploidy in Cardamine (310 x 427)
34 · 12 Sep 2013 |
1Mandakova T, Kovarik A, Zozomova-Lihova J et al. 2013 The More the Merrier: Recent Hybridization and Polyploidy in Cardamine Plant Cell
Circular genome visualization and data visualization with Circos: SWR-C and INO80 Chromatin Remodelers Recognize Nucleosome-free Regions Near +1 Nucleosomes (310 x 427)
35 · 12 Sep 2013 |
Circular genome visualization and data visualization with Circos: Genomic properties of Marine Group A bacteria indicate a role in the marine sulfur cycle (310 x 427)
36 · 12 Sep 2013 |
1Wright JJ, Mewis K, Hanson NW et al. 2013 Genomic properties of Marine Group A bacteria indicate a role in the marine sulfur cycle The ISME journal
Circular genome visualization and data visualization with Circos: Development of 5123 Intron-Length Polymorphic Markers for Large-Scale Genotyping Applications in Foxtail Millet (310 x 427)
37 · 5 Sep 2013 |
1Muthamilarasan M, Venkata Suresh B, Pandey G et al. 2013 Development of 5123 Intron-Length Polymorphic Markers for Large-Scale Genotyping Applications in Foxtail Millet DNA research : an international journal for rapid publication of reports on genes and genomes
Circular genome visualization and data visualization with Circos: High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake (310 x 427)
38 · 5 Sep 2013 |
1Demaere MZ, Williams TJ, Allen MA et al. 2013 High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake Proc Natl Acad Sci U S A
Circular genome visualization and data visualization with Circos: Generalized bacterial genome editing using mobile group II introns and Cre-lox (310 x 427)
40 · 3 Sep 2013 |
1Enyeart PJ, Chirieleison SM, Dao MN et al. 2013 Generalized bacterial genome editing using mobile group II introns and Cre-lox Mol Syst Biol 9
Circular genome visualization and data visualization with Circos: Cohesin-based chromatin interactions enable regulated gene expression within pre-existing architectural compartments (310 x 427)
41 · 3 Sep 2013 |
Circular genome visualization and data visualization with Circos: Quantitative epigenetic co-variation in CpG islands and co-regulation of developmental genes (310 x 427)
42 · 3 Sep 2013 |
Circular genome visualization and data visualization with Circos: Using Arabidopsis-Related Model Species (ARMS): Growth, Genetic Transformation, and Comparative Genomics (310 x 427)
43 · 1 Sep 2013 |
1Batelli G, Oh D-H, D’Urzo M et al. 2014 Using Arabidopsis-Related Model Species (ARMS): Growth, Genetic Transformation, and Comparative Genomics In Arabidopsis Protocols, (ed. JJ Sanchez-Serrano, J Salinas), p. 27-51. Humana Press.
Circular genome visualization and data visualization with Circos: Deep sequencing reveals increased DNA methylation in chronic rat epilepsy (310 x 427)
44 · 1 Sep 2013 |
1Kobow K, Kaspi A, Harikrishnan KN et al. 2013 Deep sequencing reveals increased DNA methylation in chronic rat epilepsy Acta neuropathologica
Circular genome visualization and data visualization with Circos: Genomic analysis identifies targets of convergent positive selection in drug-resistant Mycobacterium tuberculosis (310 x 427)
45 · 1 Sep 2013 |
Circular genome visualization and data visualization with Circos: Whole-exome sequencing identifies tetratricopeptide repeat domain 7A (TTC7A) mutations for combined immunodeficiency with intestinal atresias (310 x 427)
46 · 1 Sep 2013 |
1Chen R, Giliani S, Lanzi G et al. 2013 Whole-exome sequencing identifies tetratricopeptide repeat domain 7A (TTC7A) mutations for combined immunodeficiency with intestinal atresias The Journal of allergy and clinical immunology 132:656-664 e617.
Circular genome visualization and data visualization with Circos: Microbial life in a fjord: metagenomic analysis of a microbial mat in chilean patagonia (310 x 427)
47 · 28 Aug 2013 |
1Ugalde JA, Gallardo MJ, Belmar C et al. 2013 Microbial life in a fjord: metagenomic analysis of a microbial mat in chilean patagonia PLoS One 8:e71952.
Circular genome visualization and data visualization with Circos: Whole-genome sequencing reveals untapped genetic potential in Africa
48 · 27 Aug 2013 |
1Mace ES, Tai S, Gilding EK et al. 2013 Whole-genome sequencing reveals untapped genetic potential in Africa's indigenous cereal crop sorghum Nature communications 4:2320.
Circular genome visualization and data visualization with Circos: Breakpoint features of genomic rearrangements in neuroblastoma with unbalanced translocations and chromothripsis (310 x 427)
49 · 26 Aug 2013 |
Circular genome visualization and data visualization with Circos: Genome-Wide Analysis Reveals Coating of the Mitochondrial Genome by TFAM (310 x 427)
50 · 26 Aug 2013 |
1Wang YE, Marinov GK, Wold BJ et al. 2013 Genome-Wide Analysis Reveals Coating of the Mitochondrial Genome by TFAM PLoS One 8:e74513.
Circular genome visualization and data visualization with Circos: MEF2B mutations lead to deregulated expression of the oncogene BCL6 in diffuse large B cell lymphoma (310 x 427)
51 · 25 Aug 2013 |
1Ying CY, Dominguez-Sola D, Fabi M et al. 2013 MEF2B mutations lead to deregulated expression of the oncogene BCL6 in diffuse large B cell lymphoma Nature immunology 14:1084-1092.
Circular genome visualization and data visualization with Circos: Precision phenotyping of biomass accumulation in triticale reveals temporal genetic patterns of regulation (310 x 427)
52 · 14 Aug 2013 |
1Busemeyer L, Ruckelshausen A, Moller K et al. 2013 Precision phenotyping of biomass accumulation in triticale reveals temporal genetic patterns of regulation Scientific reports 3:2442.
Circular genome visualization and data visualization with Circos: A Comparative Genome Analysis of PME and PMEI Families Reveals the Evolution of Pectin Metabolism in Plant Cell Walls (310 x 427)
53 · 12 Aug 2013 |
Circular genome visualization and data visualization with Circos: PhenoTimer: Software for the Visual Mapping of Time-Resolved Phenotypic Landscapes (310 x 427)
54 · 12 Aug 2013 |
Circular genome visualization and data visualization with Circos: Reassortment and migration analysis of Crimean-Congo haemorrhagic fever virus (310 x 427)
55 · 12 Aug 2013 |
1Zhou Z, Deng F, Han N et al. 2013 Reassortment and migration analysis of Crimean-Congo haemorrhagic fever virus The Journal of general virology 94:2536-2548.
Circular genome visualization and data visualization with Circos: EINVis: A Visualization Tool for Analyzing and Exploring Genetic Interactions in Large-Scale Association Studies (310 x 427)
56 · 11 Aug 2013 |
Circular genome visualization and data visualization with Circos: RCircos: an R package for Circos 2D track plots (310 x 427)
57 · 10 Aug 2013 |
1Zhang H, Meltzer P, Davis S 2013 RCircos: an R package for Circos 2D track plots BMC Bioinformatics 14:244.
Circular genome visualization and data visualization with Circos: Sequence-based discovery of Bradyrhizobium enterica in cord colitis syndrome (310 x 427)
58 · 8 Aug 2013 |
1Bhatt AS, Freeman SS, Herrera AF et al. 2013 Sequence-based discovery of Bradyrhizobium enterica in cord colitis syndrome The New England journal of medicine 369:517-528.
Circular genome visualization and data visualization with Circos: High-throughput genomics in sorghum: from whole-genome resequencing to a SNP screening array (310 x 427)
59 · 7 Aug 2013 |
1Bekele WA, Wieckhorst S, Friedt W et al. 2013 High-throughput genomics in sorghum: from whole-genome resequencing to a SNP screening array Plant biotechnology journal
Circular genome visualization and data visualization with Circos: Epigenetic and genetic influences on DNA methylation variation in maize populations (310 x 427)
60 · 6 Aug 2013 |
1Eichten SR, Briskine R, Song J et al. 2013 Epigenetic and genetic influences on DNA methylation variation in maize populations Plant Cell 25:2783-2797.
Circular genome visualization and data visualization with Circos: Exploring Variation of Antibiotic Resistance Genes in Activated Sludge over a Four-Year Period through a Metagenomic Approach (310 x 427)
61 · 6 Aug 2013 |
Circular genome visualization and data visualization with Circos: DNA methylation analysis of murine hematopoietic side population cells during aging (310 x 427)
62 · 2 Aug 2013 |
1Taiwo O, Wilson GA, Emmett W et al. 2013 DNA methylation analysis of murine hematopoietic side population cells during aging Epigenetics : official journal of the DNA Methylation Society 8
Circular genome visualization and data visualization with Circos: DNA methylation contributes to natural human variation (310 x 427)
63 · 1 Aug 2013 |
1Heyn H, Moran S, Hernando-Herraez I et al. 2013 DNA methylation contributes to natural human variation Genome research 23:1363-1372.
Circular genome visualization and data visualization with Circos: Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill (310 x 427)
64 · 1 Aug 2013 |
Circular genome visualization and data visualization with Circos: Sequencing and annotated analysis of the Holstein cow genome (310 x 427)
65 · 1 Aug 2013 |
1Koks S, Lilleoja R, Reimann E et al. 2013 Sequencing and annotated analysis of the Holstein cow genome Mamm Genome 24:309-321.
Circular genome visualization and data visualization with Circos: Serum from humans on long-term calorie restriction enhances stress resistance in cell culture (310 x 427)
66 · 27 Jul 2013 |
1Omodei D, Licastro D, Salvatore F et al. 2013 Serum from humans on long-term calorie restriction enhances stress resistance in cell culture Aging (Albany NY) 5:599-606.
Circular genome visualization and data visualization with Circos: The silent mutational landscape of infant MLL-AF4 pro-B acute lymphoblastic leukemia (310 x 427)
67 · 26 Jul 2013 |
1Dobbins SE, Sherborne AL, Ma YP et al. 2013 The silent mutational landscape of infant MLL-AF4 pro-B acute lymphoblastic leukemia Genes Chromosomes Cancer 52:954-960.
Circular genome visualization and data visualization with Circos: Functional analysis of Casein Kinase 1 in a minimal circadian system (310 x 427)
68 · 25 Jul 2013 |
1van Ooijen G, Hindle M, Martin SF et al. 2013 Functional analysis of Casein Kinase 1 in a minimal circadian system PLoS One 8:e70021.
Circular genome visualization and data visualization with Circos: Advantages of Single-Molecule Real-Time Sequencing in High-GC Content Genomes (310 x 427)
70 · 23 Jul 2013 |
1Shin SC, Ahn do H, Kim SJ et al. 2013 Advantages of Single-Molecule Real-Time Sequencing in High-GC Content Genomes PLoS One 8:e68824.
Circular genome visualization and data visualization with Circos: Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga (310 x 427)
71 · 21 Jul 2013 |
1Flot JF, Hespeels B, Li X et al. 2013 Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga Nature 500:453-457.
Circular genome visualization and data visualization with Circos:  (310 x 427)
72 · 21 Jul 2013 |
1Lee J, Kim D, Park J et al.. 2013. Flow circle: circular visualization of wiki revision history. In ACM SIGGRAPH 2013 Posters, pp. 1-1. ACM, Anaheim, California.
Circular genome visualization and data visualization with Circos: Dissecting yield-associated loci in super hybrid rice by resequencing recombinant inbred lines and improving parental genome sequences (310 x 427)
74 · 18 Jul 2013 |
Circular genome visualization and data visualization with Circos: Integrated virus-host methylome analysis in head and neck squamous cell carcinoma (310 x 427)
75 · 18 Jul 2013 |
1Wilson GA, Lechner M, Koferle A et al. 2013 Integrated virus-host methylome analysis in head and neck squamous cell carcinoma Epigenetics : official journal of the DNA Methylation Society 8
Circular genome visualization and data visualization with Circos: Analysis and annotation of the hexaploid oat seed transcriptome (310 x 427)
76 · 11 Jul 2013 |
1Gutierrez-Gonzalez JJ, Tu ZJ, Garvin DF 2013 Analysis and annotation of the hexaploid oat seed transcriptome BMC Genomics 14:471.
Circular genome visualization and data visualization with Circos: Population genomics of a symbiont in the early stages of a pest invasion (310 x 427)
77 · 11 Jul 2013 |
1Brown AM, Huynh LY, Bolender CM et al. 2013 Population genomics of a symbiont in the early stages of a pest invasion Mol Ecol
Circular genome visualization and data visualization with Circos: Translational sensitivity of the Escherichia coli genome to fluctuating tRNA availability (310 x 427)
78 · 10 Jul 2013 |
1Wohlgemuth SE, Gorochowski TE, Roubos JA 2013 Translational sensitivity of the Escherichia coli genome to fluctuating tRNA availability Nucleic Acids Res 41:8021-8033.
Circular genome visualization and data visualization with Circos: Mitochondrial DNA variation analysis in cervical cancer (310 x 427)
79 · 10 Jul 2013 |
1Kabekkodu SP, Bhat S, Mascarenhas R et al. 2013 Mitochondrial DNA variation analysis in cervical cancer Mitochondrion
Circular genome visualization and data visualization with Circos: Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum (310 x 427)
81 · 2 Jul 2013 |
Circular genome visualization and data visualization with Circos: Visualizing Interchange Patterns in Massive Movement Data (310 x 427)
82 · 1 Jul 2013 |
1Zeng W, Fu C-W, Arisona SM et al. 2013 Visualizing Interchange Patterns in Massive Movement Data Computer Graphics Forum 32:271-280.
Circular genome visualization and data visualization with Circos: Exploring the genome of the salt-marsh Spartina maritima (Poaceae, Chloridoideae) through BAC end sequence analysis (310 x 427)
83 · 1 Jul 2013 |
Circular genome visualization and data visualization with Circos: Complete sequence representation across human X and Y centromeric regions (310 x 427)
84 · 28 Jun 2013 |
1Miga KH, Newton Y, Jain M et al. 2013 Complete sequence representation across human X and Y centromeric regions arXiv 1307.0035
Circular genome visualization and data visualization with Circos: The complete chloroplast genome of banana (Musa acuminata, Zingiberales): insight into plastid monocotyledon evolution (310 x 427)
85 · 28 Jun 2013 |
Circular genome visualization and data visualization with Circos: Unbiased approach for virus detection in skin lesions (310 x 427)
86 · 28 Jun 2013 |
1Bzhalava D, Johansson H, Ekstrom J et al. 2013 Unbiased approach for virus detection in skin lesions PLoS One 8:e65953.
Circular genome visualization and data visualization with Circos: An integrative characterization of recurrent molecular aberrations in glioblastoma genomes (310 x 427)
87 · 26 Jun 2013 |
Circular genome visualization and data visualization with Circos: Evolutionary Dynamics of the Accessory Genome of Listeria monocytogenes (310 x 427)
88 · 25 June 2013 |
1den Bakker HC, Desjardins CA, Griggs AD et al. 2013 Evolutionary Dynamics of the Accessory Genome of Listeria monocytogenes PLoS One 8:e67511.
Circular genome visualization and data visualization with Circos: A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheat (310 x 427)
89 · 25 June 2013 |
Circular genome visualization and data visualization with Circos: Bacteria-Human Somatic Cell Lateral Gene Transfer Is Enriched in Cancer Samples (310 x 427)
91 · 20 June 2013 |
1Riley DR, Sieber KB, Robinson KM et al. 2013 Bacteria-Human Somatic Cell Lateral Gene Transfer Is Enriched in Cancer Samples PLoS Comput Biol 9:e1003107.
Circular genome visualization and data visualization with Circos: Large-scale resource development in Gossypium hirsutum L. by 454 sequencing of genic-enriched libraries from six diverse genotypes (310 x 427)
92 · 19 June 2013 |
Circular genome visualization and data visualization with Circos: End-joining, translocations and cancer (310 x 427)
93 · 13 June 2013 |
1Bunting SF, Nussenzweig A 2013 End-joining, translocations and cancer Nat Rev Cancer
Circular genome visualization and data visualization with Circos: High-density linkage mapping of yield components and epistatic interactions in maize with doubled haploid lines from four crosses (310 x 427)
94 · 13 June 2013 |
Circular genome visualization and data visualization with Circos: Web-based visual analysis for high-throughput genomics (310 x 427)
95 · 13 June 2013 |
1Goecks J, Eberhard C, Too T et al. 2013 Web-based visual analysis for high-throughput genomics BMC Genomics 14:397.
Circular genome visualization and data visualization with Circos: High-density linkage mapping of yield components and epistatic interactions in maize with doubled haploid lines from four crosses (310 x 427)
96 · 13 Jun 2013 |
Circular genome visualization and data visualization with Circos: The relative timing of mutations in a breast cancer genome (310 x 427)
97 · 10 June 2013 |
1Newman S, Howarth KD, Greenman CD et al. 2013 The relative timing of mutations in a breast cancer genome PLoS One 8:e64991.
Circular genome visualization and data visualization with Circos: The Capsella rubella genome and the genomic consequences of rapid mating system evolution (310 x 427)
98 · 9 June 2013 |
Circular genome visualization and data visualization with Circos: A computational systems biology study for understanding salt tolerance mechanism in rice (310 x 427)
99 · 7 Jun 2013 |
Circular genome visualization and data visualization with Circos: Triplex-Inspector: an analysis tool for triplex-mediated targeting of genomic loci (310 x 427)
100 · 5 June 2013 |
1Buske FA, Bauer DC, Mattick JS et al. 2013 Triplex-Inspector: an analysis tool for triplex-mediated targeting of genomic loci Bioinformatics
Circular genome visualization and data visualization with Circos: Somatic Alterations Contributing to Metastasis of a Castration Resistant Prostate Cancer (310 x 427)
102 · 3 June 2013 |
1Nickerson ML, Im KM, Misner KJ et al. 2013 Somatic Alterations Contributing to Metastasis of a Castration Resistant Prostate Cancer Human mutation
Circular genome visualization and data visualization with Circos: Complete Genomic Landscape of a Recurring Sporadic Parathyroid Carcinoma (310 x 427)
103 · 1 Jun 2013 |
1Kasaian K, Wiseman SM, Thiessen N et al. 2013 Complete Genomic Landscape of a Recurring Sporadic Parathyroid Carcinoma J Pathol
Circular genome visualization and data visualization with Circos: Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia (310 x 427)
106 · 30 May 2013 |
1Network TCGAR 2013 Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia The New England journal of medicine 368:2059-2074.
Circular genome visualization and data visualization with Circos: Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes (310 x 427)
109 · 26 May 2013 |
1Albertsen M, Hugenholtz P, Skarshewski A et al. 2013 Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes Nature biotechnology
Circular genome visualization and data visualization with Circos: The genomic landscape of cohesin-associated chromatin interactions (310 x 427)
110 · 23 May 2013 |
1Demare LE, Leng J, Cotney J et al. 2013 The genomic landscape of cohesin-associated chromatin interactions Genome research
Circular genome visualization and data visualization with Circos: iPOP Goes the World: Integrated Personalized Omics Profiling and the Road toward Improved Health Care (310 x 427)
111 · 23 May 2013 |
Circular genome visualization and data visualization with Circos: Pairing of T-cell receptor chains via emulsion PCR (310 x 427)
112 · 22 May 2013 |
1Turchaninova MA, Britanova OV, Bolotin DA et al. 2013 Pairing of T-cell receptor chains via emulsion PCR European journal of immunology
Circular genome visualization and data visualization with Circos: Mosaic genome structure of the barley powdery mildew pathogen and conservation of transcriptional programs in divergent hosts (310 x 427)
113 · 21 May 2013 |
Circular genome visualization and data visualization with Circos: The mutational landscape of adenoid cystic carcinoma (310 x 427)
114 · 19 May 2013 |
1Ho AS, Kannan K, Roy DM et al. 2013 The mutational landscape of adenoid cystic carcinoma Nat Genet
Circular genome visualization and data visualization with Circos: Nucleotide resolution analysis of TMPRSS2 and ERG rearrangements in prostate cancer (310 x 427)
115 · 13 May 2013 |
1Weier C, Haffner MC, Mosbruger T et al. 2013 Nucleotide resolution analysis of TMPRSS2 and ERG rearrangements in prostate cancer J Pathol 230:174-183.
Circular genome visualization and data visualization with Circos: Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.) (310 x 427)
116 · 10 May 2013 |
1Ming R, Vanburen R, Liu Y et al. 2013 Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.) Genome Biol 14:R41.
Circular genome visualization and data visualization with Circos: Reprever: resolving low-copy duplicated sequences using template driven assembly (310 x 427)
117 · 8 May 2013 |
1Kim S, Medvedev P, Paton TA et al. 2013 Reprever: resolving low-copy duplicated sequences using template driven assembly Nucleic Acids Res
Circular genome visualization and data visualization with Circos: Inferring genome-wide recombination landscapes from advanced intercross lines: application to yeast crosses (310 x 427)
119 · 2 May 2013 |
Circular genome visualization and data visualization with Circos: Genome-wide analysis of the GH3 family in apple (Malus x domestica) (310 x 427)
120 · 2 May 2013 |
1Yuan H, Zhao K, Lei H et al. 2013 Genome-wide analysis of the GH3 family in apple (Malus x domestica) BMC Genomics 14:297.
Circular genome visualization and data visualization with Circos: miMsg: a target enrichment algorithm for predicted miR-mRNA interactions based on relative ranking of matched expression data (310 x 427)
121 · 1 May 2013 |
Circular genome visualization and data visualization with Circos: Organelle DNA accumulation in the recently evolved papaya sex chromosomes (310 x 427)
122 · 1 May 2013 |
1Vanburen R, Ming R 2013 Organelle DNA accumulation in the recently evolved papaya sex chromosomes Molecular genetics and genomics : MGG 288:277-284.
Circular genome visualization and data visualization with Circos: Read-depth Methodology for the Analysis of Recent Segmental Duplications in the Grapevine Genome (310 x 427)
123 · 1 May 2013 |
1Giannuzzi G, Cardone MF, Ventura M et al. 2013 Read-depth Methodology for the Analysis of Recent Segmental Duplications in the Grapevine Genome In Sequence and Genome Analysis I - Humans, Animals and Plants, (ed. i Press) iConcept Press.
Circular genome visualization and data visualization with Circos: MISTIC: mutual information server to infer coevolution (310 x 427)
124 · 27 April 2013 |
1Simonetti FL, Teppa E, Chernomoretz A et al. 2013 MISTIC: mutual information server to infer coevolution Nucleic Acids Res
Circular genome visualization and data visualization with Circos: Response to lenalidomide in myelodysplastic syndromes with del(5q): influence of cytogenetics and mutations (310 x 427)
125 · 25 April 2013 |
1Mallo M, Del Rey M, Ibanez M et al. 2013 Response to lenalidomide in myelodysplastic syndromes with del(5q): influence of cytogenetics and mutations British journal of haematology
Circular genome visualization and data visualization with Circos: Integrative genomic characterization of oral squamous cell carcinoma identifies frequent somatic drivers (310 x 427)
126 · 25 Apr 2013 |
1Pickering CR, Zhang J, Yoo SY et al. 2013 Integrative genomic characterization of oral squamous cell carcinoma identifies frequent somatic drivers Cancer discovery 3:770-781.
Circular genome visualization and data visualization with Circos: Evidence for Polygenic Adaptation to Pathogens in the Human Genome (310 x 427)
127 · 22 April 2013 |
1Daub JT, Hofer T, Cutivet E et al. 2013 Evidence for Polygenic Adaptation to Pathogens in the Human Genome Mol Biol Evol
Circular genome visualization and data visualization with Circos: IslandViewer update: improved genomic island discovery and visualization (310 x 427)
128 · 18 April 2013 |
1Dhillon BK, Chiu TA, Laird MR et al. 2013 IslandViewer update: improved genomic island discovery and visualization Nucleic Acids Res
Circular genome visualization and data visualization with Circos: Characteristics of cross-hybridization and cross-alignment of expression in pseudo-xenograft samples by RNA-Seq and microarrays (310 x 427)
129 · 18 April 2013 |
Circular genome visualization and data visualization with Circos: The zebrafish reference genome sequence and its relationship to the human genome (310 x 427)
130 · 17 April 2013 |
Circular genome visualization and data visualization with Circos: Single-cell paired-end genome sequencing reveals structural variation per cell cycle (310 x 427)
131 · 10 April 2013 |
1Voet T, Kumar P, Van Loo P et al. 2013 Single-cell paired-end genome sequencing reveals structural variation per cell cycle Nucleic Acids Res
Circular genome visualization and data visualization with Circos: Bayesian method to predict individual SNP genotypes from gene expression data (310 x 427)
132 · 8 Apr 2013 |
1Schadt EE, Woo S, Hao K 2012 Bayesian method to predict individual SNP genotypes from gene expression data Nat Genet 44:603-608.
Circular genome visualization and data visualization with Circos: The interactomes of POU5F1 and SOX2 enhancers in human embryonic stem cells (310 x 427)
133 · 3 April 2013 |
1Gao F, Wei Z, An W et al. 2013 The interactomes of POU5F1 and SOX2 enhancers in human embryonic stem cells Scientific reports 3:1588.
Circular genome visualization and data visualization with Circos: Whole-Brain Mapping of Structural Connectivity in Infants Reveals Altered Connection Strength Associated with Growth and Preterm Birth (310 x 427)
134 · 31 March 2013 |
Circular genome visualization and data visualization with Circos: Genome-Wide Characterization and Linkage Mapping of Simple Sequence Repeats in Mei (Prunus mume Sieb. et Zucc.) (310 x 427)
135 · 28 March 2013 |
Circular genome visualization and data visualization with Circos: Butyrate Induced IGF2 Activation Correlated with Distinct Chromatin Signatures Due to Histone Modification (310 x 427)
136 · 26 March 2013 |
1Shin JH, Li RW, Gao Y et al. 2013 Butyrate Induced IGF2 Activation Correlated with Distinct Chromatin Signatures Due to Histone Modification Gene regulation and systems biology 7:57-70.
Circular genome visualization and data visualization with Circos: A 1,681-locus consensus genetic map of cultivated cucumber including 67 NB-LRR resistance gene homolog and ten gene loci (310 x 427)
137 · 25 March 2013 |
Circular genome visualization and data visualization with Circos: The diverse heterogeneity of molecular alterations in prostate cancer identified through next-generation sequencing (310 x 427)
140 · 18 March 2013 |
Circular genome visualization and data visualization with Circos: CGAP: a new comprehensive platform for the comparative analysis of chloroplast genomes (310 x 427)
141 · 14 March 2013 |
1Cheng J, Zeng X, Ren G et al. 2013 CGAP: a new comprehensive platform for the comparative analysis of chloroplast genomes BMC Bioinformatics 14:95.
Circular genome visualization and data visualization with Circos: The Genomic and Transcriptomic Landscape of a HeLa Cell Line (310 x 427)
142 · 11 March 2013 |
1Landry JJ, Pyl PT, Rausch T et al. 2013 The Genomic and Transcriptomic Landscape of a HeLa Cell Line G3
Circular genome visualization and data visualization with Circos: Wheat Zapper: a flexible online tool for colinearity studies in grass genomes (310 x 427)
143 · 10 March 2013 |
1Alnemer LM, Seetan RI, Bassi FM et al. 2013 Wheat Zapper: a flexible online tool for colinearity studies in grass genomes Funct Integr Genomics 13:11-17.
Circular genome visualization and data visualization with Circos: Microbial Comparative Genomics: An Overview of Tools and Insights Into The Genus Corynebacterium (310 x 427)
144 · 6 March 2013 |
1Ali A, Soares S, Barbosa E et al. 2013 Microbial Comparative Genomics: An Overview of Tools and Insights Into The Genus Corynebacterium J Bacteriology & Parasitology 4:167.
Circular genome visualization and data visualization with Circos: Developmental timing of mutations revealed by whole-genome sequencing of twins with acute lymphoblastic leukemia (310 x 427)
145 · 5 March 2013 |
Circular genome visualization and data visualization with Circos: Noninvasive prenatal molecular karyotyping from maternal plasma (310 x 427)
146 · 5 March 2013 |
1Yu SC, Jiang P, Choy KW et al. 2013 Noninvasive prenatal molecular karyotyping from maternal plasma PLoS One 8:e60968.
Circular genome visualization and data visualization with Circos: A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.) (310 x 427)
147 · 4 March 2013 |
1Jain M, Misra G, Patel RK et al. 2013 A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.) Plant J 74:715-729.
Circular genome visualization and data visualization with Circos: Mutualistic Co-evolution of Type III Effector Genes in Sinorhizobium fredii and Bradyrhizobium japonicum (310 x 427)
148 · 28 February 2013 |
1Kimbrel JA, Thomas WJ, Jiang Y et al. 2013 Mutualistic Co-evolution of Type III Effector Genes in Sinorhizobium fredii and Bradyrhizobium japonicum PLoS pathogens 9:e1003204.
Circular genome visualization and data visualization with Circos: Metabolic model for the filamentous
149 · 28 February 2013 |
Circular genome visualization and data visualization with Circos: Phylogenetic patterns of emergence of new genes support a model of frequent de novo evolution (310 x 427)
150 · 21 February 2013 |
Circular genome visualization and data visualization with Circos: High-resolution mutational profiling suggests the genetic validity of glioblastoma patient-derived pre-clinical models (310 x 427)
151 · 20 February 2013 |
Circular genome visualization and data visualization with Circos: High-resolution mutational profiling suggests the genetic validity of glioblastoma patient-derived pre-clinical models (310 x 427)
152 · 18 February 2013 |
Circular genome visualization and data visualization with Circos: Breakpoint profiling of 64 cancer genomes reveals numerous complex rearrangements spawned by homology-independent mechanisms (310 x 427)
153 · 14 February 2013 |
Circular genome visualization and data visualization with Circos: Integrated analyses identify a master microRNA regulatory network for the mesenchymal subtype in serous ovarian cancer (310 x 427)
154 · 11 Feb 2013 |
Circular genome visualization and data visualization with Circos: The origin of Acinetobacter baumannii TYTH-1: a comparative genomics study (310 x 427)
155 · 8 February 2013 |
1Liu CC, Tang CY, Kuo HY et al. 2013 The origin of Acinetobacter baumannii TYTH-1: a comparative genomics study International journal of antimicrobial agents
Circular genome visualization and data visualization with Circos: A high-dimensional, deep-sequencing study of lung adenocarcinoma in female never-smokers (310 x 427)
156 · 6 February 2013 |
Circular genome visualization and data visualization with Circos: Impact of whole-genome and tandem duplications in the expansion and functional diversification of the f-box family in legumes (fabaceae) (310 x 427)
157 · 4 February 2013 |
Circular genome visualization and data visualization with Circos: Whole transcriptome analysis using next-generation sequencing of model species Setaria viridis to support C4 photosynthesis research (310 x 427)
158 · 3 February 2013 |
Circular genome visualization and data visualization with Circos:  (310 x 427)
159 · 1 February 2013 |
Circular genome visualization and data visualization with Circos: National borders effectively halt the spread of rabies: the current rabies epidemic in china is dislocated from cases in neighboring countries (310 x 427)
161 · 31 January 2013 |
Circular genome visualization and data visualization with Circos: Phosphotyrosine signaling proteins that drive oncogenesis tend to be highly interconnected (310 x 427)
162 · 28 January 2013 |
1Koytiger G, Kaushansky A, Gordus A et al. 2013 Phosphotyrosine signaling proteins that drive oncogenesis tend to be highly interconnected Molecular & Cellular Proteomics
Circular genome visualization and data visualization with Circos: Comparative Genomics of Recent Shiga Toxin-Producing Escherichia coli O104:H4: Short-Term Evolution of an Emerging Pathogen (310 x 427)
163 · 22 January 2013 |
Circular genome visualization and data visualization with Circos: Genomic differences between cultivated soybean, G. max and its wild relative G. soja (310 x 427)
164 · 21 January 2013 |
1Joshi T, Valliyodan B, Wu J-H et al. 2013 Genomic differences between cultivated soybean, G. max and its wild relative G. soja BMC Genomics 14:S5.
Circular genome visualization and data visualization with Circos: Perspectives on design creativity and innovation research (310 x 427)
165 · 21 January 2013 |
1Editorial board of I 2013 Perspectives on design creativity and innovation research International Journal of Design Creativity and Innovation 1:1-42.
Circular genome visualization and data visualization with Circos: The genetic landscape of high-risk neuroblastoma (310 x 427)
166 · 20 January 2013 |
1Pugh TJ, Morozova O, Attiyeh EF et al. 2013 The genetic landscape of high-risk neuroblastoma Nat Genet
Circular genome visualization and data visualization with Circos: Genomic sequencing of meningiomas identifies oncogenic SMO and AKT1 mutations (310 x 427)
167 · 20 January 2013 |
1Brastianos PK, Horowitz PM, Santagata S et al. 2013 Genomic sequencing of meningiomas identifies oncogenic SMO and AKT1 mutations Nat Genet
Circular genome visualization and data visualization with Circos: The genomic landscape of hypodiploid acute lymphoblastic leukemia (310 x 427)
168 · 20 January 2013 |
1Holmfeldt L, Wei L, Diaz-Flores E et al. 2013 The genomic landscape of hypodiploid acute lymphoblastic leukemia Nat Genet
Circular genome visualization and data visualization with Circos: Interplay of microRNAs, transcription factors and target genes: linking dynamic expression changes to function (310 x 427)
169 · 17 January 2013 |
Circular genome visualization and data visualization with Circos: Development of a robust mapping between AIS 2+ and ICD-9 injury codes (310 x 427)
170 · 16 January 2013 |
1Barnard RT, Loftis KL, Martin RS et al. 2013 Development of a robust mapping between AIS 2+ and ICD-9 injury codes Accident Analysis & Prevention 52:133-143.
Circular genome visualization and data visualization with Circos: Development of a robust mapping between AIS 2+ and ICD-9 injury codes (310 x 427)
171 · 16 January 2013 |
1Barnard RT, Loftis KL, Martin RS et al. 2013 Development of a robust mapping between AIS 2+ and ICD-9 injury codes Accident Analysis & Prevention 52:133-143.
Circular genome visualization and data visualization with Circos: Expression dynamics and genome distribution of osmoprotectants in soybean: identifying important components to face abiotic stress (310 x 427)
172 · 14 January 2013 |
Circular genome visualization and data visualization with Circos: Integrated Consensus Map of Cultivated Peanut and Wild Relatives Reveals Structures of the A and B Genomes of Arachis and Divergence of the Legume Genomes (310 x 427)
173 · 12 January 2013 |
1Shirasawa K, Bertioli DJ, Varshney RK et al. 2013 Integrated Consensus Map of Cultivated Peanut and Wild Relatives Reveals Structures of the A and B Genomes of Arachis and Divergence of the Legume Genomes DNA research : an international journal for rapid publication of reports on genes and genomes
Circular genome visualization and data visualization with Circos: Conservation, Divergence, and Genome-Wide Distribution of PAL and POX A Gene Families in Plants (310 x 427)
174 · 11 January 2013 |
1Rawal HC, Singh NK, Sharma TR 2013 Conservation, Divergence, and Genome-Wide Distribution of PAL and POX A Gene Families in Plants International Journal of Genomics 2013:10.
Circular genome visualization and data visualization with Circos: Information-rich visualisation of dense geographical networks (310 x 427)
175 · 9 January 2013 |
Circular genome visualization and data visualization with Circos: Genome-wide copy number profiling of single cells in S-phase reveals DNA-replication domains (310 x 427)
176 · 7 January 2013 |
1Van der Aa N, Cheng J, Mateiu L et al. 2013 Genome-wide copy number profiling of single cells in S-phase reveals DNA-replication domains Nucleic Acids Res
Circular genome visualization and data visualization with Circos:  (310 x 427)
177 · 4 January 2013 |
1Tomljenovic-Berube AM. 2013. SsrB-dependent regulation during Salmonella pathogenesis. McMaster University.
Circular genome visualization and data visualization with Circos: Inferring the Brassica rapa interactome using protein-protein interaction data from Arabidopsis thaliana (310 x 427)
178 · 4 Jan 2013 |
Circular genome visualization and data visualization with Circos: Genetic heterogeneity of diffuse large B-cell lymphoma (310 x 427)
179 · 4 January 2013 |
1Zhang J, Grubor V, Love CL et al. 2013 Genetic heterogeneity of diffuse large B-cell lymphoma Proc Natl Acad Sci U S A 110:1398-1403.
Circular genome visualization and data visualization with Circos: Identification of dosage-sensitive genes in Saccharomyces cerevisiae using the genetic tug-of-war method (310 x 427)
180 · 28 December 2012 |
Circular genome visualization and data visualization with Circos: Chromothripsis and focal copy number alterations determine poor outcome in malignant melanoma (310 x 427)
181 · 27 December 2012 |
1Hirsch D, Kemmerling R, Davis S et al. 2013 Chromothripsis and focal copy number alterations determine poor outcome in malignant melanoma Cancer research 73:1454-1460.
Circular genome visualization and data visualization with Circos: A genomic approach to the cryptic secondary metabolome of the anaerobic world (310 x 427)
182 · 21 December 2012 |
1Letzel AC, Pidot SJ, Hertweck C 2012 A genomic approach to the cryptic secondary metabolome of the anaerobic world Natural product reports
Circular genome visualization and data visualization with Circos: First proteomic exploration of protein-encoding genes on chromosome 1 in human liver, stomach, and colon (310 x 427)
183 · 20 December 2012 |
Circular genome visualization and data visualization with Circos: First proteomic exploration of protein-encoding genes on chromosome 1 in human liver, stomach, and colon (310 x 427)
184 · 20 December 2012 |
Circular genome visualization and data visualization with Circos: Qualitative and quantitative expression status of the human chromosome 20 genes in cancer tissues and the representative cell lines (310 x 427)
185 · 19 December 2012 |
Circular genome visualization and data visualization with Circos: Capturing the Biofuel Wellhead and Powerhouse: The Chloroplast and Mitochondrial Genomes of the Leguminous Feedstock Tree Pongamia pinnata (310 x 427)
187 · 14 December 2012 |
Circular genome visualization and data visualization with Circos: Sequences associated with centromere competency in the human genome (310 x 427)
188 · 10 December 2012 |
1Hayden KE, Strome ED, Merrett SL et al. 2013 Sequences associated with centromere competency in the human genome Molecular and cellular biology 33:763-772.
Circular genome visualization and data visualization with Circos: CSGRqtl, a comparative QTL database for Saccharinae grasses (310 x 427)
189 · 1 December 2012 |
1Zhang D, Guo H, Kim C et al. 2012 CSGRqtl, a comparative QTL database for Saccharinae grasses Plant physiology
Circular genome visualization and data visualization with Circos: Complete Genome Sequence of the Frog Pathogen Mycobacterium ulcerans Ecovar Liflandii (310 x 427)
190 · 30 November 2012 |
1Tobias NJ, Doig KD, Medema MH et al. 2013 Complete Genome Sequence of the Frog Pathogen Mycobacterium ulcerans Ecovar Liflandii J Bacteriol 195:556-564.
Circular genome visualization and data visualization with Circos: MIPS PlantsDB: a database framework for comparative plant genome research (310 x 427)
191 · 29 November 2012 |
1Nussbaumer T, Martis MM, Roessner SK et al. 2012 MIPS PlantsDB: a database framework for comparative plant genome research Nucleic Acids Res
Circular genome visualization and data visualization with Circos: Mutational dynamics of aroid chloroplast genomes (310 x 427)
192 · 29 November 2012 |
1Ahmed I, Biggs PJ, Matthews PJ et al. 2012 Mutational dynamics of aroid chloroplast genomes Genome Biol Evol 4:1316-1323.
Circular genome visualization and data visualization with Circos: Impact of genomic structural variation in Drosophila melanogaster based on population-scale sequencing (310 x 427)
193 · 28 November 2012 |
Circular genome visualization and data visualization with Circos: The Rice Genome Knowledgebase (RGKbase): an annotation database for rice comparative genomics and evolutionary biology (310 x 427)
194 · 28 November 2012 |
Circular genome visualization and data visualization with Circos: Identification and profiling of novel microRNAs in the Brassica rapa genome based on small RNA deep sequencing (310 x 427)
195 · 19 November 2012 |
Circular genome visualization and data visualization with Circos: A novel human-infection-derived bacterium provides insights into the evolutionary origins of mutualistic insect-bacterial symbioses (300 x 427)
196 · 15 November 2012 |
Circular genome visualization and data visualization with Circos: Whole-genome sequencing of the akata and mutu epstein-barr virus strains (310 x 427)
198 · 14 November 2012 |
1Lin Z, Wang X, Strong MJ et al. 2013 Whole-genome sequencing of the akata and mutu epstein-barr virus strains Journal of virology 87:1172-1182.
Circular genome visualization and data visualization with Circos: Transcriptional response of mucoid Pseudomonas aeruginosa to human respiratory mucus (310 x 427)
199 · 13 November 2012 |
1Cattoir V, Narasimhan G, Skurnik D et al. 2013 Transcriptional response of mucoid Pseudomonas aeruginosa to human respiratory mucus mBio 3:e00410-00412.
Circular genome visualization and data visualization with Circos: An Inv(16)(p13.3q24.3)-Encoded CBFA2T3-GLIS2 Fusion Protein Defines an Aggressive Subtype of Pediatric Acute Megakaryoblastic Leukemia (300 x 427)
200 · 12 November 2012 |
Circular genome visualization and data visualization with Circos: The genetic landscape of mutations in Burkitt lymphoma (300 x 427)
201 · 11 November 2012 |
1Love C, Sun Z, Jima D et al. 2012 The genetic landscape of mutations in Burkitt lymphoma Nat Genet
Circular genome visualization and data visualization with Circos: In vivo capsular switch in Streptococcus pneumoniae - analysis by whole genome sequencing (310 x 427)
202 · 8 November 2012 |
Circular genome visualization and data visualization with Circos: CooVar: Co-occurring variant analyzer (310 x 427)
203 · 1 November 2012 |
1Vergara IA, Frech C, Chen N 2012 CooVar: Co-occurring variant analyzer BMC research notes 5:615.
Circular genome visualization and data visualization with Circos: The structural, connectomic and network covariance of the human brain (310 x 427)
204 · 29 October 2012 |
Circular genome visualization and data visualization with Circos: Single-neuron sequencing analysis of l1 retrotransposition and somatic mutation in the human brain (310 x 427)
205 · 26 October 2012 |
Circular genome visualization and data visualization with Circos: Large-Scale Development of Cost-Effective Single-Nucleotide Polymorphism Marker Assays for Genetic Mapping in Pigeonpea and Comparative Mapping in Legumes (310 x 427)
206 · 26 October 2012 |
1Saxena RK, Varma Penmetsa R, Upadhyaya HD et al. 2012 Large-Scale Development of Cost-Effective Single-Nucleotide Polymorphism Marker Assays for Genetic Mapping in Pigeonpea and Comparative Mapping in Legumes DNA research : an international journal for rapid publication of reports on genes and genomes
Circular genome visualization and data visualization with Circos: Genome Analysis of a Highly Virulent Serotype 1 Strain of Streptococcus pneumoniae from West Africa (310 x 427)
208 · 17 October 2012 |
Circular genome visualization and data visualization with Circos: AVIA: an interactive web-server for annotation, visualization and impact analysis of genomic variations (310 x 427)
209 · 1 October 2012 |
Circular genome visualization and data visualization with Circos: A locally funded Puerto Rican parrot (Amazona vittata) genome sequencing project increases avian data and advances young researcher education (310 x 427)
210 · 28 September 2012 |
Circular genome visualization and data visualization with Circos: Genome Dynamics Explain the Evolution of Flowering Time CCT Domain Gene Families in the Poaceae (300 x 427)
211 · 24 September 2012 |
1Cockram J, Thiel T, Steuernagel B et al. 2012 Genome Dynamics Explain the Evolution of Flowering Time CCT Domain Gene Families in the Poaceae PLoS One 7:e45307.
Circular genome visualization and data visualization with Circos:  (310 x 427)
212 · 21 September 2012 |
1Cooke T, Horberry T, Burgess-Limerick R. 2012. Revisiting injury narratives to pinpoint human factor issues associated with surface mobile mining equipment. In Occupational Safety in Transport Conference 2012, Gold Coast, QLD, Australia.
Circular genome visualization and data visualization with Circos: Non-B DB v2.0: a database of predicted non-B DNA-forming motifs and its associated tools (310 x 427)
213 · 20 September 2012 |
1Cer RZ, Donohue DE, Mudunuri US et al. 2012 Non-B DB v2.0: a database of predicted non-B DNA-forming motifs and its associated tools Nucleic Acids Res
Circular genome visualization and data visualization with Circos: Mapping the hallmarks of lung adenocarcinoma with massively parallel sequencing (300 x 427)
214 · 14 September 2012 |
1Imielinski M, Berger AH, Hammerman PS et al. 2012 Mapping the hallmarks of lung adenocarcinoma with massively parallel sequencing Cell 150:1107-1120.
Circular genome visualization and data visualization with Circos: Circuitry and dynamics of human transcription factor regulatory networks (300 x 427)
215 · 14 September 2012 |
1Neph S, Stergachis AB, Reynolds A et al. 2012 Circuitry and dynamics of human transcription factor regulatory networks Cell 150:1274-1286.
Circular genome visualization and data visualization with Circos: Endosymbiotic bacteria as a source of carotenoids in whiteflies (300 x 427)
216 · 12 September 2012 |
Circular genome visualization and data visualization with Circos: The fate of duplicated genes in a polyploid plant genome (300 x 427)
217 · 10 September 2012 |
1Roulin A, Auer PL, Libault M et al. 2012 The fate of duplicated genes in a polyploid plant genome Plant J
Circular genome visualization and data visualization with Circos: Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors (310 x 427)
219 · 1 Sep 2012 |
Circular genome visualization and data visualization with Circos: Poly-gene fusion transcripts and chromothripsis in prostate cancer (310 x 427)
221 · 25 Aug 2012 |
1Wu C, Wyatt AW, McPherson A et al. 2012 Poly-gene fusion transcripts and chromothripsis in prostate cancer Genes Chromosomes Cancer
Circular genome visualization and data visualization with Circos: Poly-gene fusion transcripts and chromothripsis in prostate cancer (310 x 427)
222 · 25 Aug 2012 |
1Wu C, Wyatt AW, McPherson A et al. 2012 Poly-gene fusion transcripts and chromothripsis in prostate cancer Genes Chromosomes Cancer
Circular genome visualization and data visualization with Circos: The role of mutations in epigenetic regulators in myeloid malignancies (310 x 427)
223 · 17 August 2012 |
1Shih AH, Abdel-Wahab O, Patel JP et al. 2012 The role of mutations in epigenetic regulators in myeloid malignancies Nat Rev Cancer 12:599-612.
Circular genome visualization and data visualization with Circos: Extensive genetic variation in somatic human tissues (300 x 427)
224 · 15 August 2012 |
1O'Huallachain M, Karczewski KJ, Weissman SM et al. 2012 Extensive genetic variation in somatic human tissues Proc Natl Acad Sci U S A 109:18018-18023.
Circular genome visualization and data visualization with Circos: Quality Visualization of Microarray Datasets Using Circos (300 x 427)
225 · 7 Aug 2012 |
1Koch M, Wiese M 2012 Quality Visualization of Microarray Datasets Using Circos Microarrays 1:84-94.
Circular genome visualization and data visualization with Circos: Auxin response factor gene family in Brassica rapa: genomic organization, divergence, expression, and evolution (310 x 427)
226 · 3 Aug 2012 |
1Mun JH, Yu HJ, Shin JY et al. 2012 Auxin response factor gene family in Brassica rapa: genomic organization, divergence, expression, and evolution Molecular genetics and genomics : MGG
Circular genome visualization and data visualization with Circos: Comprehensive Identification and Annotation of Cell Type-Specific and Ubiquitous CTCF-Binding Sites in the Human Genome (300 x 427)
228 · 19 July 2012 |
Circular genome visualization and data visualization with Circos: Human centromere genomics: now it
229 · 17 July 2012 |
1Hayden KE 2012 Human centromere genomics: now it's personal Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology 20:621-633.
Circular genome visualization and data visualization with Circos: Genetic variants representation, annotation and prioritization in the post-GWAS era (300 x 427)
230 · 17 July 2012 |
Circular genome visualization and data visualization with Circos: BRAF(L597) mutations in melanoma are associated with sensitivity to MEK inhibitors (310 x 427)
231 · 13 Jul 2012 |
1Dahlman KB, Xia J, Hutchinson K et al. 2012 BRAF(L597) mutations in melanoma are associated with sensitivity to MEK inhibitors Cancer discovery 2:791-797.
Circular genome visualization and data visualization with Circos: The banana (Musa acuminata) genome and the evolution of monocotyledonous plants (300 x 427)
232 · 11 July 2012 |
Circular genome visualization and data visualization with Circos: Changes in Genome Content Generated via Segregation of Non-allelic Homologs (310 x 427)
233 · 21 Jun 2012 |
Circular genome visualization and data visualization with Circos: Leveraging input and output structures for joint mapping of epistatic and marginal eQTLs (310 x 427)
234 · 15 June 2012 |
Circular genome visualization and data visualization with Circos: Whole-genome analysis informs breast cancer response to aromatase inhibition (310 x 427)
235 · 10 June 2012 |
1Ellis MJ, Ding L, Shen D et al. 2012 Whole-genome analysis informs breast cancer response to aromatase inhibition Nature 486:353-360.
Circular genome visualization and data visualization with Circos: Tandem duplication of chromosomal segments is common in ovarian and breast cancer genomes (310 x 427)
236 · 6 Jun 2012 |
1McBride DJ, Etemadmoghadam D, Cooke SL et al. 2012 Tandem duplication of chromosomal segments is common in ovarian and breast cancer genomes The Journal of Pathology.
Circular genome visualization and data visualization with Circos: Deep sequencing of the oral microbiome reveals signatures of periodontal disease (310 x 427)
237 · 4 Jun 2012 |
1Liu B, Faller LL, Klitgord N et al. 2012 Deep sequencing of the oral microbiome reveals signatures of periodontal disease PLoS One 7:e37919.
Circular genome visualization and data visualization with Circos: A Complete Sequence and Transcriptomic Analyses of Date Palm (Phoenix dactylifera L.) Mitochondrial Genome (310 x 427)
239 · 24 May 2012 |
Circular genome visualization and data visualization with Circos: Genetic basis of blood pressure and hypertension (310 x 427)
240 · 21 May 2012 |
1Padmanabhan S, Newton-Cheh C, Dominiczak AF 2012 Genetic basis of blood pressure and hypertension Trends in genetics : TIG
Circular genome visualization and data visualization with Circos: Mapping connectivity damage in the case of Phineas Gage (310 x 427)
241 · 16 May 2012 |
1Van Horn JD, Irimia A, Torgerson CM et al. 2012 Mapping connectivity damage in the case of Phineas Gage PLoS One 7:e37454.
Circular genome visualization and data visualization with Circos: Genome-wide patterns of standing genetic variation in a marine population of three-spined sticklebacks (310 x 427)
242 · 15 May 2012 |
Circular genome visualization and data visualization with Circos: Vitamin D receptor binding, chromatin states and association with multiple sclerosis (310 x 427)
243 · 11 May 2012 |
1Disanto G, Sandve GK, Berlanga-Taylor AJ et al. 2012 Vitamin D receptor binding, chromatin states and association with multiple sclerosis Human molecular genetics
Circular genome visualization and data visualization with Circos: Mitochondrial DNA deletions are associated with non-B DNA conformations (310 x 427)
245 · 3 May 2012 |
1Damas J, Carneiro J, Goncalves J et al. 2012 Mitochondrial DNA deletions are associated with non-B DNA conformations Nucleic Acids Res
Circular genome visualization and data visualization with Circos: Methylation profile of triple-negative breast carcinomas (310 x 427)
247 · 2 May 2012 |
1Branham MT, Marzese DM, Laurito SR et al. 2012 Methylation profile of triple-negative breast carcinomas Oncogenesis 1:e17.
Circular genome visualization and data visualization with Circos: A metagenomic assessment of winter and summer bacterioplankton from Antarctica Peninsula coastal surface waters (310 x 427)
248 · 26 Apr 2012 |
Circular genome visualization and data visualization with Circos: Whole-genome bisulfite DNA sequencing of a DNMT3B mutant patient (310 x 427)
249 · 26 Apr 2012 |
1Heyn H, Vidal E, Sayols S et al. 2012 Whole-genome bisulfite DNA sequencing of a DNMT3B mutant patient Epigenetics : official journal of the DNA Methylation Society 7
Circular genome visualization and data visualization with Circos: From sequence to molecular pathology, and a mechanism driving the neuroendocrine phenotype in prostate cancer (310 x 427)
250 · 24 Apr 2012 |
Circular genome visualization and data visualization with Circos: jpHMM: recombination analysis in viruses with circular genomes such as the hepatitis B virus (310 x 427)
251 · 21 Apr 2012 |
1Schultz AK, Bulla I, Abdou-Chekaraou M et al. 2012 jpHMM: recombination analysis in viruses with circular genomes such as the hepatitis B virus Nucleic Acids Res
Circular genome visualization and data visualization with Circos: Co-expression of soybean Dicer-like genes in response to stress and development (310 x 427)
252 · 15 Apr 2012 |
1Curtin SJ, Kantar MB, Yoon HW et al. 2012 Co-expression of soybean Dicer-like genes in response to stress and development Funct Integr Genomics
Circular genome visualization and data visualization with Circos: Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies (300 x 427)
253 · 4 April 2012 |
Circular genome visualization and data visualization with Circos: Genetics of gene expression in primary immune cells identifies cell type-specific master regulators and roles of HLA alleles (310 x 427)
254 · 25 March 2012 |
Circular genome visualization and data visualization with Circos: Comparative transcriptomics of three Poaceae species reveals patterns of gene expression evolution (300 x 427)
255 · 21 March 2012 |
Circular genome visualization and data visualization with Circos: Ancestral Synteny Shared between Distantly-Related Plant Species from the Asterid (Coffea canephora and Solanum sp.) and Rosid (Vitis vinifera) Clades (300 x 427)
256 · 20 March 2012 |
Circular genome visualization and data visualization with Circos: Sleeping Beauty mutagenesis reveals cooperating mutations and pathways in pancreatic adenocarcinoma (310 x 427)
257 · 15 Mar 2012 |
1Mann KM, Ward JM, Yew CC et al. 2012 Sleeping Beauty mutagenesis reveals cooperating mutations and pathways in pancreatic adenocarcinoma Proc Natl Acad Sci U S A 109:5934-5941.
Circular genome visualization and data visualization with Circos: Effect of oxygen minimum zone formation on communities of marine protists (310 x 429)
258 · 8 March 2012 |
1Orsi W, Song YC, Hallam S et al. 2012 Effect of oxygen minimum zone formation on communities of marine protists The ISME journal
Circular genome visualization and data visualization with Circos: Genome-wide analysis of cytogenetic aberrations in ETV6/RUNX1-positive childhood acute lymphoblastic leukaemia (310 x 429)
259 · 7 March 2012 |
1Borst L, Wesolowska A, Joshi T et al. 2012 Genome-wide analysis of cytogenetic aberrations in ETV6/RUNX1-positive childhood acute lymphoblastic leukaemia British journal of haematology
Circular genome visualization and data visualization with Circos: Frequency and prognostic impact of mutations in SRSF2, U2AF1, and ZRSR2 in patients with myelodysplastic syndromes (310 x 429)
260 · 2 March 2012 |
Circular genome visualization and data visualization with Circos: To Detect and Analyze Sequence Repeats Whatever Be Their Origin Mobile Genetic Elements (310 x 429)
261 · 25 February 2012 |
Circular genome visualization and data visualization with Circos: Insight into the Molecular Evolution of Non-Specific Lipid Transfer Proteins via Comparative Analysis Between Rice and Sorghum (310 x 429)
262 · 24 February 2012 |
Circular genome visualization and data visualization with Circos: Multiple Mutations in Heterogeneous Miltefosine-Resistant Leishmania major Population as Determined by Whole Genome Sequencing (310 x 429)
264 · 14 February 2012 |
1Coelho AC, Boisvert S, Mukherjee A et al. 2012 Multiple Mutations in Heterogeneous Miltefosine-Resistant Leishmania major Population as Determined by Whole Genome Sequencing PLoS neglected tropical diseases 6:e1512.
Circular genome visualization and data visualization with Circos: Transcriptomic landscape of breast cancers through mRNA sequencing (310 x 427)
265 · 14 Feb 2012 |
1Eswaran J, Cyanam D, Mudvari P et al. 2012 Transcriptomic landscape of breast cancers through mRNA sequencing Scientific reports 2:264.
Circular genome visualization and data visualization with Circos: RNA-seq Analysis of the Functional Compartments within the Rat Placentation Site (310 x 427)
266 · 12 Feb 2012 |
1Shankar K, Zhong Y, Kang P et al. 2012 RNA-seq Analysis of the Functional Compartments within the Rat Placentation Site Endocrinology 153:1999-2011.
Circular genome visualization and data visualization with Circos: Patient-tailored connectomics visualization for the assessment of white matter atrophy in traumatic brain injury (310 x 427)
268 · 6 February 2012 |
Circular genome visualization and data visualization with Circos: Circular representation of human cortical networks for subject and population-level connectomic visualization (310 x 427)
270 · 28 January 2012 |
Circular genome visualization and data visualization with Circos: The effects of hepatitis B virus integration into the genomes of hepatocellular carcinoma patients (310 x 427)
271 · 20 Jan 2012 |
1Jiang Z, Jhunjhunwala S, Liu J et al. 2012 The effects of hepatitis B virus integration into the genomes of hepatocellular carcinoma patients Genome research 22:593-601.
Circular genome visualization and data visualization with Circos: Combinations of histone modifications mark exon inclusion levels (310 x 427)
273 · 5 January 2012 |
1Enroth S, Bornelov S, Wadelius C et al. 2012 Combinations of histone modifications mark exon inclusion levels PLoS One 7:e29911.
Circular genome visualization and data visualization with Circos: Evidence for transcript networks composed of chimeric RNAs in human cells (310 x 427)
274 · 4 Jan 2012 |
1Djebali S, Lagarde J, Kapranov P et al. 2012 Evidence for transcript networks composed of chimeric RNAs in human cells PLoS One 7:e28213.
Circular genome visualization and data visualization with Circos: Chromatin topology and the regulation of antigen receptor assembly (300 x 427)
275 · 3 Jan 2012 |
1Bossen C, Mansson R, Murre C 2012 Chromatin topology and the regulation of antigen receptor assembly Annual review of immunology 30:337-356.
Circular genome visualization and data visualization with Circos: Analysis of global transcriptional profiles of enterotoxigenic Escherichia coli isolate E24377A (310 x 427)
276 · 3 Jan 2012 |
Circular genome visualization and data visualization with Circos: Refinement of Bos taurus sequence assembly based on BAC-FISH experiments (310 x 427)
277 · 30 December 2011 |
1Partipilo G, D'Addabbo P, Lacalandra GM et al. 2011 Refinement of Bos taurus sequence assembly based on BAC-FISH experiments BMC Genomics 12:639.
Circular genome visualization and data visualization with Circos: Variations in the exome of the LNCaP prostate cancer cell line (310 x 427)
278 · 27 December 2011 |
1Spans L, Atak ZK, Van Nieuwerburgh F et al. 2011 Variations in the exome of the LNCaP prostate cancer cell line The Prostate
Circular genome visualization and data visualization with Circos: Whole genome sequencing of matched primary and metastatic acral melanomas (310 x 427)
280 · 19 December 2011 |
1Turajlic S, Furney SJ, Lambros MB et al. 2012 Whole genome sequencing of matched primary and metastatic acral melanomas Genome research 22:196-207.
Circular genome visualization and data visualization with Circos: A metagenome of a full-scale microbial community carrying out enhanced biological phosphorus removal (310 x 427)
281 · 15 December 2011 |
Circular genome visualization and data visualization with Circos: Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing (300 x 427)
283 · 7 December 2011 |
Circular genome visualization and data visualization with Circos: A High Density Consensus Map of Rye (<italic>Secale cereale</italic> L.) Based on DArT Markers (300 x 427)
284 · 6 December 2011 |
1Milczarski PÇ, Bolibok-Bragoszewska H, Myskow B et al. 2011 A High Density Consensus Map of Rye (Secale cereale L.) Based on DArT Markers PLoS One 6:e28495.
Circular genome visualization and data visualization with Circos: Hybrid incompatibility in Arabidopsis is determined by a multi-locus genetic network (300 x 427)
285 · 1 December 2011 |
1Burkart-Waco D, Josefsson C, Dilkes BR et al. 2011 Hybrid incompatibility in Arabidopsis is determined by a multi-locus genetic network Plant physiology
Circular genome visualization and data visualization with Circos:  (310 x 427)
286 · 1 Dec 2011 |
1Bello JP, Grosche P, Muller M et al. 2011 ACM Computers in Entertainment 1
Circular genome visualization and data visualization with Circos: Sequencing and annotated analysis of an Estonian human genome (300 x 427)
289 · 27 November 2011 |
1Lilleoja R, Sarapik A, Reimann E et al. 2011 Sequencing and annotated analysis of an Estonian human genome Gene
Circular genome visualization and data visualization with Circos: LegumeIP: an integrative database for comparative genomics and transcriptomics of model legumes (310 x 427)
290 · 21 Nov 2011 |
1Li J, Dai X, Liu T et al. 2012 LegumeIP: an integrative database for comparative genomics and transcriptomics of model legumes Nucleic Acids Res 40:D1221-1229.
Circular genome visualization and data visualization with Circos: The Medicago genome provides insight into the evolution of rhizobial symbioses (310 x 427)
291 · 16 Nov 2011 |
1Young ND Debelle F Oldroyd GE et al. 2011 The Medicago genome provides insight into the evolution of rhizobial symbioses Nature 480:520-524.
Circular genome visualization and data visualization with Circos: Whole-Genome Comparison of Two Campylobacter jejuni Isolates of the Same Sequence Type Reveals Multiple Loci of Different Ancestral Lineage (300 x 427)
292 · 11 November 2011 |
Circular genome visualization and data visualization with Circos: Molecular Basis of Virulence in Staphylococcus aureus Mastitis (300 x 427)
293 · 11 November 2011 |
1Le Marechal C, Seyffert N, Jardin J et al. 2011 Molecular Basis of Virulence in Staphylococcus aureus Mastitis PLoS One 6:e27354.
Circular genome visualization and data visualization with Circos: MicroRNA modulation in complex regional pain syndrome (300 x 427)
294 · 10 November 2011 |
1Orlova IA, Alexander GM, Qureshi RA et al. 2011 MicroRNA modulation in complex regional pain syndrome Journal of translational medicine 9:195.
Circular genome visualization and data visualization with Circos: The first draft of the pigeonpea genome sequence (300 x 427)
295 · 25 October 2011 |
1Singh N, Gupta D, Jayaswal P et al. 2011 The first draft of the pigeonpea genome sequence Journal of Plant Biochemistry and Biotechnology 1-15.
Circular genome visualization and data visualization with Circos: The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements (300 x 427)
296 · 23 October 2011 |
1De Fazio S, Bartonicek N, Di Giacomo M et al. 2011 The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements Nature advanced online
Circular genome visualization and data visualization with Circos:  (300 x 427)
297 · 23 October 2011 |
1Park R, Gehlenborg N, Park P. 2011. Seqeyes: A multi-scale interactive visualization tool for structural variations. In 1st IEEE Symposium on Biological Data Visualization, Providence, RI.
Circular genome visualization and data visualization with Circos: A 3000-loci transcription map of chromosome 3B unravels the structural and functional features of gene islands in hexaploid wheat (300 x 427)
298 · 21 October 2011 |
Circular genome visualization and data visualization with Circos: Analysis of cancer metabolism with high-throughput technologies (300 x 427)
299 · 18 October 2011 |
1Markovets A, Herman D 2011 Analysis of cancer metabolism with high-throughput technologies BMC Bioinformatics 12:S8.
Circular genome visualization and data visualization with Circos: Cowpea-Soybean Synteny Clarified through an Improved Genetic Map (300 x 427)
300 · 13 October 2011 |
1Lucas MR, Diop N-N, Wanamaker S et al. 2011 Cowpea-Soybean Synteny Clarified through an Improved Genetic Map The Plant Genome 4:218-225.
Circular genome visualization and data visualization with Circos: Genome-wide Translocation Sequencing Reveals Mechanisms of Chromosome Breaks and Rearrangements in B Cells (300 x 427)
302 · 29 September 2011 |
Circular genome visualization and data visualization with Circos: Rapid Genotyping of Soybean Cultivars Using High Throughput Sequencing (300 x 427)
303 · 20 September 2011 |
1Varala K, Swaminathan K, Li Y et al. 2011 Rapid Genotyping of Soybean Cultivars Using High Throughput Sequencing PLoS One 6:e24811.
Circular genome visualization and data visualization with Circos: Mouse genomic variation and its effect on phenotypes and gene regulation (310 x 427)
304 · 14 September 2011 |
1Keane TM, Goodstadt L, Danecek P et al. 2011 Mouse genomic variation and its effect on phenotypes and gene regulation Nature 477:289-294.
Circular genome visualization and data visualization with Circos: The complete mitochondrial genome of the verongid sponge Aplysina cauliformi: implications for DNA barcoding in demosponges (300 x 427)
305 · 6 September 2011 |
1Sperling E, Rosengarten R, Moreno M et al. 2011 The complete mitochondrial genome of the verongid sponge Aplysina cauliformi: implications for DNA barcoding in demosponges Hydrobiologia advanced online:1-9.
Circular genome visualization and data visualization with Circos: Genomic sequencing of colorectal adenocarcinomas identifies a recurrent VTI1A-TCF7L2 fusion (300 x 427)
306 · 4 September 2011 |
1Bass AJ, Lawrence MS, Brace LE et al. 2011 Genomic sequencing of colorectal adenocarcinomas identifies a recurrent VTI1A-TCF7L2 fusion Nat Genet 43:964-968.
Circular genome visualization and data visualization with Circos: Identification of activated cytokine pathways in the blood of systemic lupus erythematosus, myositis, rheumatoid arthritis, and scleroderma patients (300 x 427)
307 · 31 August 2011 |
Circular genome visualization and data visualization with Circos: Human embryonic stem cell derived hepatocyte-like cells as a tool for in vitro hazard assessment of chemical carcinogenicity (300 x 427)
308 · 27 August 2011 |
1Yildirimman R, Brolen G, Vilardell M et al. 2011 Human embryonic stem cell derived hepatocyte-like cells as a tool for in vitro hazard assessment of chemical carcinogenicity Toxicological sciences: an official journal of the Society of Toxicology
Circular genome visualization and data visualization with Circos:  (300 x 427)
309 · 19 August 2011 |
1Gutierrez-Gonzalez JJ, Garvin DF 2011 The Plant Genome 4:178-190.
Circular genome visualization and data visualization with Circos: Origins of the E. coli Strain Causing an Outbreak of Hemolytic-Uremic Syndrome in Germany (310 x 427)
311 · 27 July 2011 |
1Rasko DA, Webster DR, Sahl JW et al. 2011 Origins of the E. coli Strain Causing an Outbreak of Hemolytic-Uremic Syndrome in Germany New England Journal of Medicine
Circular genome visualization and data visualization with Circos: Structural variation in two human genomes mapped at single-nucleotide resolution by whole genome de novo assembly (310 x 427)
312 · 24 July 2011 |
Circular genome visualization and data visualization with Circos: A genetic linkage map and comparative mapping of the prairie vole (Microtus ochrogaster) genome (310 x 427)
314 · 7 July 2011 |
Circular genome visualization and data visualization with Circos: Heavy metal resistance in Cupriavidus metallidurans CH34 is governed by an intricate transcriptional network (310 x 427)
315 · 25 June 2011 |
1Monsieurs P, Moors H, Van Houdt R et al. 2011 Heavy metal resistance in Cupriavidus metallidurans CH34 is governed by an intricate transcriptional network Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine
Circular genome visualization and data visualization with Circos: Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis (310 x 427)
316 · 9 June 2011 |
Circular genome visualization and data visualization with Circos: The sensitivity of massively parallel sequencing for detecting candidate infectious agents associated with human tissue (310 x 427)
317 · 13 May 2011 |
Circular genome visualization and data visualization with Circos: Measuring Transitions into the Workforce as a Form of Accountability (310 x 427)
318 · 4 May 2011 |
Circular genome visualization and data visualization with Circos: VIZ-GRAIL: Visualizing Functional Connections Across Disease Loci (310 x 427)
321 · 19 Apr 2011 |
Circular genome visualization and data visualization with Circos: High resolution linkage maps of the model organism Petunia reveal substantial synteny decay with the related genome of tomato (310 x 427)
322 · 1 Apr 2011 |
Circular genome visualization and data visualization with Circos: Unlocking the barley genome by chromosomal and comparative genomics (310 x 427)
323 · 1 April 2011 |
1Mayer KF, Martis M, Hedley PE et al. 2011 Unlocking the barley genome by chromosomal and comparative genomics Plant Cell 23:1249-1263.
Circular genome visualization and data visualization with Circos: BROAD: Diversified Keyword Search in Databases (310 x 427)
324 · 18 Mar 2011 |
1Zhao F, Zhang X, Tung AKH et al. 2001 BROAD: Diversified Keyword Search in Databases NUS SOC Technical Report TRD3/11
Circular genome visualization and data visualization with Circos: Chromosome Conformation Capture Uncovers Potential Genome-Wide Interactions between Human Conserved Non-Coding Sequences (310 x 427)
325 · 7 Mar 2011 |
Circular genome visualization and data visualization with Circos: Global Proteomic Analysis of Two Tick-borne Emerging Zoonotic Agents: Anaplasma phagocytophilum and Ehrlichia chaffeensis (310 x 427)
327 · 17 Feb 2011 |
Circular genome visualization and data visualization with Circos: The genomic complexity of primary human prostate cancer (310 x 427)
328 · 10 February 2011 |
1Berger MF, Lawrence MS, Demichelis F et al. 2011 The genomic complexity of primary human prostate cancer Nature 470:214-220.
Circular genome visualization and data visualization with Circos: The genomic complexity of primary human prostate cancer (310 x 427)
329 · 9 Feb 2011 |
1Berger MF, Lawrence MS, Demichelis F et al. 2011 The genomic complexity of primary human prostate cancer Nature 470:214-220.
Circular genome visualization and data visualization with Circos: Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer genomes (310 x 427)
331 · 8 Feb 2011 |
Circular genome visualization and data visualization with Circos: Identification of essential genes in C. jejuni genome highlights hyper-variable plasticity regions (310 x 427)
333 · 2 Feb 2011 |
Circular genome visualization and data visualization with Circos: Evolution, structure and function of mitochondrial carriers: a review with new insights (310 x 427)
334 · 25 Jan 2011 |
1Palmieri F, Pierri CL, De Grassi A et al. 2011 Evolution, structure and function of mitochondrial carriers: a review with new insights Plant J 66:161-181.
Circular genome visualization and data visualization with Circos: Identification of fusion genes in breast cancer by paired-end RNA-sequencing (310 x 427)
335 · 19 Jan 2011 |
1Edgren H, Murumagi A, Kangaspeska S et al. 2011 Identification of fusion genes in breast cancer by paired-end RNA-sequencing Genome Biol 12:R6.
Circular genome visualization and data visualization with Circos: Comparative analysis of rosaceous genomes and the reconstruction of a putative ancestral genome for the family (310 x 427)
336 · 12 Jan 2011 |
Circular genome visualization and data visualization with Circos: Massive Genomic Rearrangement Acquired in a Single Catastrophic Event during Cancer Development (310 x 427)
337 · 7 Jan 2011 |
Circular genome visualization and data visualization with Circos: The origin of the Haitian cholera outbreak strain (310 x 427)
338 · 6 January 2011 |
1Chin CS, Sorenson J, Harris JB et al. 2011 The origin of the Haitian cholera outbreak strain The New England journal of medicine 364:33-42.
Circular genome visualization and data visualization with Circos: Environment-responsive transcription factors bind subtelomeric elements and regulate gene silencing (300 x 427)
339 · 4 Jan 2011 |
1Smith JJ, Miller LR, Kreisberg R et al. 2011 Environment-responsive transcription factors bind subtelomeric elements and regulate gene silencing Mol Syst Biol 7:455.
Circular genome visualization and data visualization with Circos: Maternal plasma DNA sequencing reveals the genome-wide genetic and mutational profile of the fetus (310 x 427)
340 · 8 Dec 2010 |
Circular genome visualization and data visualization with Circos: Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss (300 x 427)
341 · 2 Dec 2010 |
Circular genome visualization and data visualization with Circos: The Arthrobacter arilaitensis Re117 Genome Sequence Reveals Its Genetic Adaptation to the Surface of Cheese (310 x 427)
342 · 24 Nov 2010 |
Circular genome visualization and data visualization with Circos: Use of a Rabbit Soft Tissue Chamber Model to Investigate Campylobacter jejuni - Host Interactions (300 x 427)
343 · 16 Nov 2010 |
1Stintzi A, Flint A, Butcher J et al. 2010 Use of a Rabbit Soft Tissue Chamber Model to Investigate Campylobacter jejuni - Host Interactions Frontiers in Microbiology 1:126.
Circular genome visualization and data visualization with Circos: Use of a Rabbit Soft Tissue Chamber Model to Investigate Campylobacter jejuni - Host Interactions (310 x 427)
344 · 16 November 2010 |
1Flint A, Butcher J, Clarke C et al. 2010 Use of a Rabbit Soft Tissue Chamber Model to Investigate Campylobacter jejuni - Host Interactions Frontiers in Microbiology 1
Circular genome visualization and data visualization with Circos: Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection (310 x 427)
345 · 14 Nov 2010 |
Circular genome visualization and data visualization with Circos: A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres (310 x 427)
346 · 10 Nov 2010 |
1Ellwood SR, Liu Z, Syme RA et al. 2010 A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres Genome Biol 11:R109.
Circular genome visualization and data visualization with Circos: FusionSeq: a modular framework for finding gene fusions by analyzing paired-end RNA-sequencing data (310 x 427)
347 · 21 Oct 2010 |
1Sboner A, Habegger L, Pflueger D et al. 2010 FusionSeq: a modular framework for finding gene fusions by analyzing paired-end RNA-sequencing data Genome Biol 11:R104.
Circular genome visualization and data visualization with Circos: Somatic structural rearrangements in genetically engineered mouse mammary tumors (300 x 427)
348 · 13 Oct 2010 |
1Varela I, Klijn C, Stephens PJ et al. 2010 Somatic structural rearrangements in genetically engineered mouse mammary tumors Genome Biol 11 10 R100.
Circular genome visualization and data visualization with Circos: Correlated mutations: a hallmark of phenotypic amino acid substitutions (300 x 427)
349 · 16 Sep 2010 |
1Kowarsch A, Fuchs A, Frishman D et al. 2010 Correlated mutations: a hallmark of phenotypic amino acid substitutions PLoS Comput Biol 6 9 e1000923.
Circular genome visualization and data visualization with Circos: Correlation of FT-ICR Mass Spectra with the Chemical and Physical Properties of Associated Crude Oils (300 x 427)
350 · 9 Sep 2010 |
Circular genome visualization and data visualization with Circos: Genomic acquisition of a capsular polysaccharide virulence cluster by non-pathogenic Burkholderia isolates (300 x 427)
351 · 27 Aug 2010 |
Circular genome visualization and data visualization with Circos: Telomere disruption results in non-random formation of de novo dicentric chromosomes involving acrocentric human chromosomes (300 x 427)
352 · 12 Aug 2010 |
Circular genome visualization and data visualization with Circos:  (310 x 429)
353 · 11 Aug 2010 |
1Jones SJ, Laskin J, Li YY et al. 2010 Evolution of an adenocarcinoma in response to selection by targeted kinase inhibitors Genome Biol 11 8 R82.
Circular genome visualization and data visualization with Circos: The Complete Genome of <italic>Propionibacterium freudenreichii</italic> CIRM-BIA1<sup>T</sup>, a Hardy Actinobacterium with Food and Probiotic Applications (310 x 427)
354 · 23 Jul 2010 |
Circular genome visualization and data visualization with Circos: A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria (300 x 427)
355 · 12 July 2010 |
1Lucker S, Wagner M, Maixner F et al. 2010 A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria Proc Natl Acad Sci U S A 107 30 13479-13484.
Circular genome visualization and data visualization with Circos: The mutation spectrum revealed by paired genome sequences from a lung cancer patient (310 x 427)
357 · 27 May 2010 |
1Lee W, Jiang Z, Liu J et al. 2010 The mutation spectrum revealed by paired genome sequences from a lung cancer patient Nature 465 7297 473-477.
Circular genome visualization and data visualization with Circos: The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments (300 x 427)
358 · 5 May 2010 |
Circular genome visualization and data visualization with Circos: A three-dimensional model of the yeast genome (300 x 427)
359 · 2 May 2010 |
1Duan Z, Andronescu M, Schutz K et al. 2010 A three-dimensional model of the yeast genome Nature 465 7296 363-367.
Circular genome visualization and data visualization with Circos: Investigation of the Transcriptome of Prairie Cord Grass, a New Cellulosic Biomass Crop (300 x 427)
360 · 23 Apr 2010 |
1Gedye K, Gonzalez-Hernandez J, Ban Y et al. 2010 Investigation of the Transcriptome of Prairie Cord Grass, a New Cellulosic Biomass Crop Plant Gen 3 2 69-80.
Circular genome visualization and data visualization with Circos: Genome remodelling in a basal-like breast cancer metastasis and xenograft (300 x 427)
361 · 15 April 2010 |
3Ding L, Ellis MJ, Li S et al. 2010 Genome remodelling in a basal-like breast cancer metastasis and xenograft Nature 464 7291 999-1005.
Circular genome visualization and data visualization with Circos: Discovery of phytophthora infestans genes expressed in planta through mining of cDNA libraries (300 x 427)
362 · 24 Mar 2010 |
15Sierra R, Rodriguez RL, Chaves D et al. 2010 Discovery of phytophthora infestans genes expressed in planta through mining of cDNA libraries PLoS One 5 3 e9847.
Circular genome visualization and data visualization with Circos: Complete sequence of the mitochondrial genome of a diatom alga Synedra acus and comparative analysis of diatom mitochondrial genomes (300 x 427)
363 · 22 March 2010 |
Circular genome visualization and data visualization with Circos: Identification of the regulatory logic controlling salmonella pathoadaptation by the SsrA-SsrB two-component system (300 x 427)
364 · 12 Mar 2010 |
16Tomljenovic-Berube AM, Mulder DT, Whiteside MD et al. 2010 Identification of the regulatory logic controlling salmonella pathoadaptation by the SsrA-SsrB two-component system PLoS Genet 6 3 e1000875.
Circular genome visualization and data visualization with Circos: Identification of the regulatory logic controlling Salmonella pathoadaptation by the SsrA-SsrB two-component system (300 x 427)
365 · 6 Feb 2010 |
1Tomljenovic-Berube AM, Mulder DT, Whiteside MD et al. 2010 Identification of the regulatory logic controlling Salmonella pathoadaptation by the SsrA-SsrB two-component system PLoS Genet 6 3 e1000875.
Circular genome visualization and data visualization with Circos: Comparative genomics and transduction potential of Enterococcus faecalis temperate bacteriophages (300 x 427)
366 · 1 Feb 2010 |
18Yasmin A, Kenny JG, Shankar J et al. 2010 Comparative genomics and transduction potential of Enterococcus faecalis temperate bacteriophages J Bacteriol 192 4 1122-1130.
Circular genome visualization and data visualization with Circos: U87MG decoded: the genomic sequence of a cytogenetically aberrant human cancer cell line (300 x 427)
367 · 29 Jan 2010 |
2Clark MJ, Homer N, O'Connor BD et al. 2010 U87MG decoded: the genomic sequence of a cytogenetically aberrant human cancer cell line PLoS Genet 6 1 e1000832.
Circular genome visualization and data visualization with Circos: Distinguishing microbial genome fragments based on their composition: evolutionary and comparative genomic perspectives (300 x 427)
368 · 25 Jan 2010 |
Circular genome visualization and data visualization with Circos: Genome sequence of the palaeopolyploid soybean (300 x 427)
369 · 14 Jan 2010 |
14Schmutz J, Cannon SB, Schlueter J et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 463 7278 178-183.
Circular genome visualization and data visualization with Circos: Complex landscapes of somatic rearrangement in human breast cancer genomes (300 x 427)
370 · 24 Dec 2009 |
41Stephens PJ, McBride DJ, Lin ML et al. 2009 Complex landscapes of somatic rearrangement in human breast cancer genomes Nature 462 7276 1005-1010.
Circular genome visualization and data visualization with Circos: A comprehensive catalogue of somatic mutations from a human cancer genome (300 x 427)
371 · 16 Dec 2009 |
10Pleasance ED, Cheetham RK, Stephens PJ et al. 2010 A comprehensive catalogue of somatic mutations from a human cancer genome Nature 463 7278 191-196.
Circular genome visualization and data visualization with Circos: A gene family encoding RING finger proteins in rice: their expansion, expression diversity, and co-expressed genes (300 x 427)
372 · 3 Dec 2009 |
Circular genome visualization and data visualization with Circos: A first look at entire human methylomes (300 x 427)
373 · 1 Dec 2009 |
24Costello JF, Krzywinski M, Marra MA 2009 A first look at entire human methylomes Nature biotechnology 27 12 1130-1132.
Circular genome visualization and data visualization with Circos: The B73 maize genome: complexity, diversity, and dynamics (300 x 427)
374 · 20 Nov 2009 |
40Schnable PS Ware D Fulton RS et al. 2009 The B73 maize genome: complexity, diversity, and dynamics Science 326 5956 1112-1115.
Circular genome visualization and data visualization with Circos: Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides (300 x 427)
375 · 6 Nov 2009 |
35McMurdie PJ, Behrens SF, Muller JA et al. 2009 Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides PLoS Genet 5 11 e1000714.
Circular genome visualization and data visualization with Circos: GeneWiz browser: An Interactive Tool for Visualizing Sequenced Chromosomes (300 x 427)
376 · 25 Sep 2009 |
1Hallin PF, Staerfeldt H-H, Rotenberg E et al. 2009 GeneWiz browser: An Interactive Tool for Visualizing Sequenced Chromosomes Stand Genomic Sci 1 2 204-215.
Circular genome visualization and data visualization with Circos: Mechanisms of gold biomineralization in the bacterium Cupriavidus metallidurans (310 x 427)
377 · 27 Aug 2009 |
1Reith F, Etschmann B, Grosse C et al. 2009 Mechanisms of gold biomineralization in the bacterium Cupriavidus metallidurans Proc Natl Acad Sci U S A 106 42 17757-17762.
Circular genome visualization and data visualization with Circos: Evidence and evolutionary analysis of ancient whole-genome duplication in barley predating the divergence from rice (300 x 427)
378 · 22 Aug 2009 |
Circular genome visualization and data visualization with Circos: Evolutionary breakpoints in the gibbon suggest association between cytosine methylation and karyotype evolution (300 x 427)
379 · 26 Jun 2009 |
Circular genome visualization and data visualization with Circos: Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing (300 x 427)
380 · 18 June 2009 |
28Freeman JD, Warren RL, Webb JR et al. 2009 Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing Genome research 19 10 1817-1824.
Circular genome visualization and data visualization with Circos: Microbial community proteomics: elucidating the catalysts and metabolic mechanisms that drive the Earth
381 · 4 May 2009 |
Circular genome visualization and data visualization with Circos: A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome (300 x 427)
383 · 3 Dec 2008 |
Circular genome visualization and data visualization with Circos: Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia (300 x 427)
384 · 29 Nov 2008 |
1Aury JM, Jaillon O, Duret L et al. 2006 Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia Nature 444:171-178.
Circular genome visualization and data visualization with Circos: Comparative Genomics in Switchgrass Using 61,585 High-Quality Expressed Sequence Tags (300 x 427)
385 · 1 Nov 2008 |
49Tobias CM, Sarath G, Twigg P et al. 2008 Comparative Genomics in Switchgrass Using 61,585 High-Quality Expressed Sequence Tags The Plant Genome 1 2 111-124.
Circular genome visualization and data visualization with Circos: Fusion and fission of genes define a metric between fungal genomes (300 x 427)
386 · 24 Oct 2008 |
46Durrens P, Nikolski M, Sherman D 2008 Fusion and fission of genes define a metric between fungal genomes PLoS Comput Biol 4 10 e1000200.
Circular genome visualization and data visualization with Circos: Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation (300 x 427)
387 · 22 Jul 2008 |
Circular genome visualization and data visualization with Circos: The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla (300 x 427)
388 · 26 Aug 2007 |
52Jaillon O, Aury JM, Noel B et al. 2007 The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla Nature 449 7161 463-467.
Circular genome visualization and data visualization with Circos: Population bottlenecks as a potential major shaping force of human genome architecture (300 x 427)
389 · 1 Jul 2007 |
51Gherman A, Chen PE, Teslovich TM et al. 2007 Population bottlenecks as a potential major shaping force of human genome architecture PLoS Genet 3 7 e119.
Circular genome visualization and data visualization with Circos: Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria (300 x 427)
390 · 7 Mar 2007 |
53Lo I, Denef VJ, Verberkmoes NC et al. 2007 Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria Nature 446 7135 537-541.
Circular genome visualization and data visualization with Circos:
392 · 9 Nov 2006 |
30Jaillon O, Aury JM, Wincker P 2009 'Changing by doubling', the impact of Whole Genome Duplications in the evolution of eukaryotes C R Biol 332 2-3 241-253.
Circular genome visualization and data visualization with Circos: Fish genomics and biology (310 x 427)
393 · 1 Dec 2005 |
1Roest Crollius H, Weissenbach J 2005 Fish genomics and biology Genome research 15:1675-1682.