Circos > Documentation > Tutorials > Ticks And Labels > Single Ticks
Loading
Circos at the EMBO NGS workshop in Tunis, Sept 15–25.

Use the latest version of Circos and read Circos best practices—these list recent important changes and identify sources of common problems.
If you are having trouble, post your issue to the Circos Google Group and include all files and detailed error logs. Please do not email me directly unless it is urgent—you are much more likely to receive a timely reply from the group.
Don't know what question to ask? Read Points of View: Visualizing Biological Data by Bang Wong, myself and invited authors from the Points of View series.

4 — Tick Marks, Grids and Labels

8. Ticks at Specific Positions

circos.conf


<<include colors_fonts_patterns.conf>>

<<include ideogram.conf>>
<<include ticks.conf>>

<image>
<<include etc/image.conf>>
</image>

karyotype   = data/karyotype/karyotype.human.txt

chromosomes_units           = 1000000
#chromosomes                 = hs1[a]:0-75;hs1[b]:100-150;hs1[c]:200-)
chromosomes = hs1
chromosomes_display_default = no

<<include etc/housekeeping.conf>>


bands.conf

show_bands            = no
fill_bands            = yes
band_stroke_thickness = 2
band_stroke_color     = white
band_transparency     = 0


ideogram.conf


<ideogram>

<spacing>
default = 0.01r
break   = 2u
</spacing>

<<include ideogram.position.conf>>
<<include ideogram.label.conf>>
<<include bands.conf>>

</ideogram>



ideogram.label.conf

show_label     = yes
label_font     = default
label_radius   = (dims(ideogram,radius_inner) + dims(ideogram,radius_outer))/2
label_center   = yes
label_size     = 72
label_with_tag = yes
label_parallel = yes
label_case     = upper


ideogram.position.conf

radius           = 0.90r
thickness        = 100p
fill             = no
fill_color       = black
stroke_thickness = 2
stroke_color     = black


ticks.conf


show_ticks          = yes
show_tick_labels    = yes

<ticks>

radius         = dims(ideogram,radius_outer)
multiplier     = 1/1u
color          = black
force_display  = yes
thickness      = 4p
size           = 20p
show_label     = yes
label_size     = 36p
label_offset   = 10p
format         = %d

<tick>
show           = yes
position       = 25u
</tick>

<tick>
show           = yes
position       = 30u,32u,34u,40u
color          = red
</tick>

<tick>
show           = yes
rposition      = 0.05,0.15,0.2
spacing_type   = relative
color          = blue
format         = %d
</tick>

<tick>
show           = yes
rposition      = 0.55,0.7,0.9
spacing_type   = relative
label_relative = yes
color          = green
format         = %.2f
</tick>

<tick>
show           = yes
position       = start
label          = 3'
color          = purple
format         = %s
</tick>

<tick>
show           = yes
position       = end
label          = 5'
color          = purple
format         = %s
</tick>

</ticks>